Gene detail

Detailed information of alvinactis_v1_g30871 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g30871	PROTEIN CBG13728	chr_17	4534770	4583066	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g30871

ATGCCGCCACCGATACCACCACCAAGAGATCTATACTACCACGAAGGAGAGGACTTTCTAGAACAAGACATTACCAGAGAACTGAGCCGTTTTAGAGGCCCTGATCCTAGAATCAGTACCATGCCTGAATACTTCCCCAACAGAGATCCATATAATGACAGGGGATCTTATGACAGAGAGTATTCAGATAGAAGCCAAGGTCGAGGACGAGATATGGATTACGAGAGAAATCGATCAGACTCTGATTATCGTCACAGAGATAGAGAAAGAAGTAGTAGGTGGGAACGTGAAAATGATTACCGAGATGAACCGGGTAGAGATAGATACAGAGATCATAGTGGCTACCGAGGAAGAGACAGAGAACGAGAGCGAGATCGTGACTTGGATGACGATCGCAGGGATTATGATCGCAGAGATAGAGATCGTGATCGTGACTGGGATAGATCAAGAAGCAGTCGTGATGATTACTCCAAAGAAGAACCTCGACATCGACGAGAACGGACCACTCGTTGGGATGATGGATATGAAGAGCATAGAGAACGGAAAAGGGAGGCAAGAGAAAAGGAGAAGAGATCTGAACGGGAGAAAGAAGCTGAATTTAAAAGCGATAATGAACCAACGTCGGTCATTATGCTTCGAGGATTACGTGATGAAATCAAAGAAGATGACATTCTGGAAGAGCTTTATTCTGCAGAAGTTGCCTTCAAAGATGTCAGGATTGTTAGAAACAAGATTGGTTACACAAGAGGCTTTGGTTTTGTTGAGTTTGATACTGTGGAATCAGCTAAGCAATGGATGGATCATATTAAAGGTCGTTTGATTTGCCAAGGATTCTCCATTGGTGCAGATTACAGCAGACCTAAAAATGCACAGGATAAGGACTGGAATTGCCCCAAGTGTGGGACGCAGAATTTCTCATCAAGAAGACGGACGACATGCTTTTCCTGTGGAACTCCAAAAGAAGTTTCAGCTGATGACAAAGAAAGTTCCAATCCACCATGCAAAGTTCTTATTTTAAAAGGCCTCGATGTCCTTACCAATGAAGAAACAgattctcccatggcgaagctccagaaggagctaaaggagctaagagattctgcaagtatcGCGCTAGTGGACAACGCTGTTACTTCCCTCCAGCAGCTTATTTGCCCGGCTGGGCTCTTTGACCCCTACTCGGCATTGACAGCTTTGGCTAGAagacatagtccatcagggaatgatgagttaccatttagacgacgtcagagagctcccaataagctcgccgaagttcccaggtacgtctacctggagtcctttatgtcaaagctggatgataagtctggttatgaccatatattgttgacgaaggagtctcagacttatgtcggttttgagtgggaaggttgctggtatggacccgaccataagGTTCGCACGATGCTGTCGTCAATAACTACTTTACCCATTTACGACATCCGTCTAATAAGGGACAAATTGACCAGCACGTCAAGAGGCTTCTGTTTTGTTGAACTCGCTTCTATAGAGGATGCCACCAATTTCTTAGAAGAGCTATCAAGTATGAATCCACCATTTGAGATAGATGGCCGCATTATTAATACATTGTATGCTAAGAACAGTGAACCAGCGCCAGCTAGTAAACCAAGCAATGTGGCAACAGCAGCAATAGAACAAGCACAATGGTCCAGCACTCCACAGCAGAATAACTCAGCTGCTGCTGCAATGGCCATTGCACAGGCACAATCAGCATCTCAATCATCCTACTCATCCCAGTACCAACAGCCCCTAACAAGTGGCACGGCCCAGCAAGAAACAGCATCTTCCAGTTCAACTGCTTCCACCGCCTCCACATCTAATTCCTCTGCTGCACTACCATTTGCAGCCCCTCCAATGACCAACTttgtatatgacacattatcagggtattactatgactcagtctcagggttgtactaCGATTCTACAACACAGTATTACTATAACGGCACAACAGGGCAATACTCCTACTGGGATACCAATATTCAGCAATATGTACCTGTTGCCGCCGATGGGTCTGCCATTCCTACCACTACAGATGCTacaacaaaaccatcatcctcaacacccacgacgacaacaacacccacaacaaatactacaagtacaccgactccatcaacaGAAGCTGCTGATTCTTTAGCTGCTAAAGAAAAGCAAAAGAAAGCCAAAACTCTACAAGCCAAAAAGATTGCAAAGGACATGGAGCGATGGGCCAGAAATGTAAACGCTGCAAAGGCACAACACCAACCACCCTCTGAAGACGTGAAGAAAACCGCTGCAGCTGAGGAACCTGAATTCAAAAAGCCAACTTTGCCACCACCTAAGCTATTAACAGTACTCAATAAGGCAGCAACTACAAGTGATGCAACAGTAGAGTCTGTAAAAGTCATGTCAAGTCCACTATCGGGCATGATTGTACCAATCAAACCAATCAAAGAGGAGGAGGAACCTCCCCCAGgttcaaagtggtctagtcttatagcagagtatggtgaagatgatgaCTCTGATCCAGAGCCAGAAGAACCAGTTTTCACTTCTGACCAAACGTTTGCAGACTTCAAGTTAATGGCGTGTCTTCTTTGCAAACGACAGTTCCCAAATAAGGAGGGATTGGACAGACACATACAGTTCTCAGATCTACATAAGCAAAATATCGACATACACAAGAAGATGAACATGACAGACAAACAACGGGACGAGATTGAACGACGAGAGAGAGATTCCAAGTACAGAGACAGAGCGAAGGAACGAAGAGCAAAATACAACCAACCGGATATCGGcagtacttttactcctcccgctcccagtagaaagcgtaaaccattccaaccaacatcAAAATATGAACAGCCGACAAAAACAGGAATCGGTTCAGAGAACATAGGCAATCAAATGCTAAGGGCTATGGGATGGAGCCAAGGTACTGGCCTAGGCAAAGATGGACAAGGGATTGTGGATCCTATCAAGGCGCAAATGAGAACCCAGTACGCGGGTCTTGGATCGGCAGGGAGTTCCTACGGCTCAGTAACTGGTGCTGAAACACCCAGAGAAAAACGACAAAAATTGGAGGATTTGAAGTATGAATTTACCGAGTGTGATTCAAGTGACAAACGATGGCGAGTTGCTGTACCTAAAAAGGAAGGCGCTTGTGAAGCAAAAGAAAACCCAGCAAGACAGAAAAAATGCATATTCACATGTGATCCAGGCAGTTACCTGGACATTAATAGTGCTAAACTAGAATGCAAGAAATGCCCAGTTGGACATTACAGCGTTGGTGGTGGTGTTCGGTTTAGTGACTGGCAGAAGTTGCCTGTTGGTTTTGAGGTACATTCAAGCCAACTCCGTTACCGTGGATATGGCTATGACAACGAATTCAATAAAGAAAAAGGAGCAAACTGTTCAAAGACTGGATGGACACCGCTAGGAGACAGTGTAGCAACATCTGGAGAAGAGTGTACAACACAACTTACATATGCTGTTACTCTAAAGAAAGATGGCTTCGTCAAGTTCAAGTACCACTTCACTGACAGCATGTACACTGTTTTTAAAGTATTTATGCGTAATGACCAATGCAGGGCATCTTCCTCTAAGCATGATACCTACCCCCAAAACACTTTGGAGAATGAGTGGCAGGAAAAGAAGATCGCTTTGAAAGCAGGCCGTAACTTGATTACCTGGGAGGTCAGTGCTCTTACTTATGGCACTCATGAAAAAAGAGACCCTGTGTATATCGGTGAAATTGAAATACAAGGTGTTGCATATACTTCAGAATGTCAAATGTGTGACCCAGGAACATTTGCAAAAGATGAGGGTTCAGCATTCTGTAATGTTTGCCCTAAGAACACCATGTCAATTGTTGGTTCATCAAAGTGCTCAAAGTGTAACGAAGTGACTGAATATTCAGctattGGTTCTAAAAACTGTTCTGAGAGGAAACCATGTACCCAGCAAGACTACTATGACACAAGAAGTGCCTGCGACAGTGACCGTAAAACCCAGATTAAATACCAGTGGATAGAACCTAAGATTTGCCGAGATGACATCAAAGGGGCTGTAAAACTACCCGCATCTGGTGCTAAAGAAGACTGTCCACCCTGTAATCCAGGGATGAAGGTTAATGACACTGGTTGCATCTTTTGTCCAACTAACCACTTCAGTGATGGAATGAAAGAGTGTAAAGCTTGTCCAGTGTCAACATCCCCCGTTTATGGCTATGATATAAAATGGTGGAGAAACATTCCACCCAACATGAGAGCCTCTTGCTTCTCTATATCAGATCGTGGTTGCACGTCCAGACAAGGCTGGCAGCCTCATGGTACCTACATAAGTAGTGGTATCAACCATGCCGATGATGTGTACTTGGTGCTTAAGCTTACTAGTAAAGGCTTTGGTGCCCCACAAGGAAAAGCTGGTGCATATGGCATGGTTACCTTTGTCTTTGAACTGGACTGTGAGGGTGATTGCATCTTCAAGTTTAGAAAGAGTGAAACATTGAAGGGCGAACAGATTGTGGAGACTTGGAAAGGAAAGCATACCAAGACTAAATATTCGTACATAGTGTCTTCCCAAAGTAGAGTTACATTTAGATGGACGTTTCAGAAGGTGTCGTCGGATGATGGTATGGATGGTATCACACACGactatccaaatgacagGGTTAAAATGTACTCTCTGAATGTGACTAATACTCTAGATGGTGGTGCGGCACGTTGTAGGGACTGTCCTATAACATCCAAGGACAACAGTGGATGTGTTTCTTGTCCAAGTGGAAACTACATCGATGAGAAGCAAAAAAAGTGTGCCCCATGCCCAGAAAatacttatctgaatgtcacccatccttatggattcaaggcatgtatAAAATGTGGTCCTGGACTTGTTAGTGATGAAGGCTCCATAGCCTGCCACTCCAACTGCAAATTCACATCCAAGAAACACAACAGAGAATTTGACTTCTCTGAACTACAAGGACAAATTGGTGTGGCAGGTGCGCCGTCATTCACTACGCGTGGTTCCCGCTACTATCATGTGTTCCATATCAGTCTCTGTGGACAGCCTTACAAGCCGGCCGTCTGCCACAGTAATATCAGTGTCAGCTCAGGAAGAAGGGAGGACTTTAACTTAAGTTCAAGTATTTGTCGTTACACTATGATTCCCAATCGACAAGGCTCAGCACTAGCTGCTCAACCAATGCGCATTGGAGAACAACTGAACGGTATCTATGAAGACAAGCTTCACAATGAGACTTCAGCATTTGAAGATGAAGGGCTCATCAAGAACATCACGACTCACTTCAATTATCATTTCCACTCTCCTGAACAAACAAGTGCATGTCCAACAGGAAGACAAGTAGTTGTCACCTTAATGTGTGATCACACGGCTCCTAAAAAGGGTGTCCTACAGCTGCCTGCTAAATGTCCAGATGGTACTTGTGATGGATGCAAGTTTCAGTTCCTATGGCGTACCAAATATGCTTGTCCAGAGTGCTCAGTCGCTGACTACAAGAAAGTGAAAGGAGCCTGTGAGCATGGCCATAAGACAACAAGCTACATGTGGAAAGAACCAAAATCATGCCGTGATGGTGTATCTCTAGCAAAAGACATCGTAGAAAAATGCAGCCTCTTGGACCAGACTGTAGGATCAGCAATGAAAGACTTCAAGATTGGTATTGGTATCGCTGCACTATTGACTGTTCTTCTCATCTGCTCAGTCTGTTTCTTGTACTGCAAGAACAGAAAACTTACATACAAGTACAGTCGTCTGGTACAAAATGGTTCTGGTCACCCAGATGAACTGCCTCCCGCAGAGAAATGTGGTATggatgatgatgaagaggatgatgatgaggagGTTCACTTCAGGCGAGGTGCTAAAGAACGTGGTAAAAATCTCCTGAAAAGCTTACGTGGTTTGACATCTAAGAGCCGTAAGCGGGACAAAGTTTCTTTCGAAGATGAAGACGACGGTGGAGATGAAGAATACTTTGAGTCTGTGCAACTTGAGGCTGTTAGATAA

Transcript

alvinactis_v1_g30871

Protein

alvinactis_v1_g30871

MPPPIPPPRDLYYHEGEDFLEQDITRELSRFRGPDPRISTMPEYFPNRDPYNDRGSYDREYSDRSQGRGRDMDYERNRSDSDYRHRDRERSSRWERENDYRDEPGRDRYRDHSGYRGRDRERERDRDLDDDRRDYDRRDRDRDRDWDRSRSSRDDYSKEEPRHRRERTTRWDDGYEEHRERKREAREKEKRSEREKEAEFKSDNEPTSVIMLRGLRDEIKEDDILEELYSAEVAFKDVRIVRNKIGYTRGFGFVEFDTVESAKQWMDHIKGRLICQGFSIGADYSRPKNAQDKDWNCPKCGTQNFSSRRRTTCFSCGTPKEVSADDKESSNPPCKVLILKGLDVLTNEETDSPMAKLQKELKELRDSASIALVDNAVTSLQQLICPAGLFDPYSALTALARRHSPSGNDELPFRRRQRAPNKLAEVPRYVYLESFMSKLDDKSGYDHILLTKESQTYVGFEWEGCWYGPDHKVRTMLSSITTLPIYDIRLIRDKLTSTSRGFCFVELASIEDATNFLEELSSMNPPFEIDGRIINTLYAKNSEPAPASKPSNVATAAIEQAQWSSTPQQNNSAAAAMAIAQAQSASQSSYSSQYQQPLTSGTAQQETASSSSTASTASTSNSSAALPFAAPPMTNFVYDTLSGYYYDSVSGLYYDSTTQYYYNGTTGQYSYWDTNIQQYVPVAADGSAIPTTTDATTKPSSSTPTTTTTPTTNTTSTPTPSTEAADSLAAKEKQKKAKTLQAKKIAKDMERWARNVNAAKAQHQPPSEDVKKTAAAEEPEFKKPTLPPPKLLTVLNKAATTSDATVESVKVMSSPLSGMIVPIKPIKEEEEPPPGSKWSSLIAEYGEDDDSDPEPEEPVFTSDQTFADFKLMACLLCKRQFPNKEGLDRHIQFSDLHKQNIDIHKKMNMTDKQRDEIERRERDSKYRDRAKERRAKYNQPDIGSTFTPPAPSRKRKPFQPTSKYEQPTKTGIGSENIGNQMLRAMGWSQGTGLGKDGQGIVDPIKAQMRTQYAGLGSAGSSYGSVTGAETPREKRQKLEDLKYEFTECDSSDKRWRVAVPKKEGACEAKENPARQKKCIFTCDPGSYLDINSAKLECKKCPVGHYSVGGGVRFSDWQKLPVGFEVHSSQLRYRGYGYDNEFNKEKGANCSKTGWTPLGDSVATSGEECTTQLTYAVTLKKDGFVKFKYHFTDSMYTVFKVFMRNDQCRASSSKHDTYPQNTLENEWQEKKIALKAGRNLITWEVSALTYGTHEKRDPVYIGEIEIQGVAYTSECQMCDPGTFAKDEGSAFCNVCPKNTMSIVGSSKCSKCNEVTEYSAIGSKNCSERKPCTQQDYYDTRSACDSDRKTQIKYQWIEPKICRDDIKGAVKLPASGAKEDCPPCNPGMKVNDTGCIFCPTNHFSDGMKECKACPVSTSPVYGYDIKWWRNIPPNMRASCFSISDRGCTSRQGWQPHGTYISSGINHADDVYLVLKLTSKGFGAPQGKAGAYGMVTFVFELDCEGDCIFKFRKSETLKGEQIVETWKGKHTKTKYSYIVSSQSRVTFRWTFQKVSSDDGMDGITHDYPNDRVKMYSLNVTNTLDGGAARCRDCPITSKDNSGCVSCPSGNYIDEKQKKCAPCPENTYLNVTHPYGFKACIKCGPGLVSDEGSIACHSNCKFTSKKHNREFDFSELQGQIGVAGAPSFTTRGSRYYHVFHISLCGQPYKPAVCHSNISVSSGRREDFNLSSSICRYTMIPNRQGSALAAQPMRIGEQLNGIYEDKLHNETSAFEDEGLIKNITTHFNYHFHSPEQTSACPTGRQVVVTLMCDHTAPKKGVLQLPAKCPDGTCDGCKFQFLWRTKYACPECSVADYKKVKGACEHGHKTTSYMWKEPKSCRDGVSLAKDIVEKCSLLDQTVGSAMKDFKIGIGIAALLTVLLICSVCFLYCKNRKLTYKYSRLVQNGSGHPDELPPAEKCGMDDDEEDDDEEVHFRRGAKERGKNLLKSLRGLTSKSRKRDKVSFEDEDDGGDEEYFESVQLEAVR*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan
PF01585	G-patch	G-patch domain	Family	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF17780	OCRE	OCRE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467	Domain	G-patch domain	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR009011	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039181	Family	EIG121-like	Interproscan
IPR041591	Domain	OCRE domain	Interproscan
IPR044865	Domain	MRH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22727	PROTEIN CBG13728	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-