Gene detail

Detailed information of alvinactis_v1_g2957 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g2957	COATOMER SUBUNIT EPSILON	chr_2	2620404	2638054	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g2957

ATGGCGGATCCTGGTGACGTGGACGAACTCTTTGATATCAAGAACCATTTCTTCATAGGAAATTACCAAGCATGTATTAACGAAGCGCAGAAAAAACAGCCATCTACGAGAGAACTTATCATTGAAAAGGACATTTATATGTACAGAGCATATACAGCACAGGGTAAATATGGTGTTGTATTAGATGAAATTACCCAGTTGTCTCCCCTTGAGGTTCAGCCTGTACGAATACTTGCAGACTATCTTCAAAATCCCAAGAAAAGGGACTCGATTCTAAGCTCTATTGAAAAGCAACTCAACTCATCAAGTAACATTAATGACTACTATTTGTTGATGGTTGCATCAGTTTATGTACATGAACAGAACTATGACTCAGCACTGAGATGTCTTCATCAGTCAGAATCATTAGAATGCTCTGCCCTCAGTGTACAAATATACATTGCAATGAATAGAATAGACCTCGCCAAAAAAGAAATGAAAAAGATGCAGGAGCTTGATGATGATGCAACCTTAACCCAGCTGGCTTTAGCATGGTTTAACCTTGCTGTAGGTGGGGAAAAGTATCAAGATGCCTATTATATATTTCAAGAAATGGCAGATAAATATTCATCAACTGTAATGTTGCTTAATGGGCAAGCAGTAGCCTACATGCATCAGGGTAAATATGAAGATGCTGAAAGTATCTTACAAGAAGCTTTGGAGAAGGACAGCAACAATGCAGAAACACTCATTAACCTTATTGTTCTTTCTCAACATCTTGGAAAAACTCCAGAGGTCAGCAACCGATTAATTTCTCAACTCAAAGATGGCCATCCCTACAATCCCTTTACAACTGATTATATAGCAAAGGAGAATGACTTTGAACGCTGCGCTGGCCAACATGACTACATGTATGATACTGATGACAGCGGACCAAattatgatgatgattactatgatgattacgaggagtactatgatagtgatgCAGAGGCAAGGATTATCCGAAAAATGGCCAAGCTCAAAGCTCAAAAAGAGTCTAATGTAGTTTTTGTTCCTGATATTCACCAATGCAAGTCACTTGTCGATATCTGTAGCAAGCATTTGGCGTTAAACTTTCCATTTGCATATCTGCAAGACCGGTTTCCGCCGGTGCCAGATGATTTGCAGCTGAGGGTGATCTCATTTTCATTTCCCGATAATGAAGAGAAGATAAGGAAATATGCTGAGTTTAGTAGGTCTGATGCTGATATCATGTACCCATCAAGATTGTGTGACACAGGCAAAGTGACTGAGATGATGCAGATTGGATTTCGACTTAGTGCCAATGCAGATGGTAAATATGTCACCATACACTTTGACAGGGGTAAGATCACATCAGCGCAATGCACATGTGGCTCTACCACTAGCTGGTGTACGCACGTGATTGCCACTGCAATAATGAGGATTCGACATGCAGGAAAACTTTCCAAGTCCCAGATACGATTACCAGTCTCAGATGCACTGAATGCCCTCAGTCGCGAACAGCTTTTGAAGTTTTCTCATTATCTGTTATACCATCATCAAAATCATAAAATAGTGGAAACTGCTCAGGGATTGATTGACAAGCTTGTCAATCGCCATGGTGACTATACTGACGAGGAAATCAATGTTGTTCATGGGGCACCAGACCCCACTGCTGGGCCAGGTCTTGATGAGGAGTGCCATTGGTTTGTGTGCAGTAAAGGCTTCAAGGAGAACTGTACTAACTTAATTTATGAAGCACTAGACACATTGGGATTTGCCTCTCTTGAATACAGGGAGGAAAACTACCATCTCCATGAGCTGTGGTACAAGAATCGATGCCAACAACCATTAGTTAAAGATGACATCGATATGGAAATTGGCTCCGAGTTTCACTCAGCATACTTGCTCGAACGTCGTCATGATTCGTCTAAGATCCTAGAGACAGTGTTAGATCTGCTAAAGGACGATACCATGAGTGGTTTTGTTGCTATTAAGTCTTGCACAGAACAGTTGTTATCGCGCTTTGAGAAGAACAAATTGCACCGTTCAAACTACTCGAGAAACTCTCACACACAAGTTACAAACAGGCCTTTTTATCCAAGTGGTTCACCAGCTATGGGCTTCACTTCTAGACCTTTTAGGAGCTGGATGCTATGCGATGAGCTCTCTAGATTATGGCAAGTTGCTGTACTCAACCCTAAGCTAAAGCTTAAAGAACAAGAACAAGTTGTTCAAGAACTTTTCAAGTGGAACAACGAAGCTCATGCAGGTTGTAGTGTAGAGAAACTCAAGCCATGGAAAGGCCTAGAAGTAGCTTACAACCTCTGCCAGCACATCAAATGGTACAAACCTGAGATGCAGTCCATCCTACAAGGTCCAATCCCAGCTGACTACAGCATAAGTGGATGCACGCTAGTGAACATAAACGTTGAAGGAGCCACCGTACAGTGTCACCTGCCATATTGTTTCTCGTACGGGTCAACAACTCTTGATATTCACTCGTGGTGTTCCATAATCCATGCTTTAGATGTGTATAACTATGGCACCCCTGCAGTGAACATTGCCTTATGTCTGTCTGTTGCACTCATCACTCTGTACAGATATCACGTGGACACTCGGTCGTGCATATCAGATACGCCCATTGTAGCCAAGTGTACTCTTGAGCATGACGACCCAAAGGAAACCGCTGACACATACATGGATGTTGACGAGGTTGCTGACCAAGAGGGTTCATGTCCAACGATATGGCCTTCTGATACTCTGTTGTCACTACGATGCTTTGCCTTCCTTCATAATATCCTATGGTCCAGGGAAAGGACCGCAGATCTAGAATCTCTTATCGCAACCCAACGGCAGCGAGACCCTTCAGGAACAACAGAGCGAGGTGCCATTTTGAGTAATATTTCAGACTCGAAATCACTTTTGTTTCAACTTGGTGCGCTTGGGTTGTTTCTGCCAAAGTTCCCGATGGCTACAATGAAACAAGAGGTAGAACAGTTCGATCTTGAAAACTGGCTAACGTTTCAACTCCTGGAGTCCAAACCAACTACATCAAGTGATCTTGAACTTCTAGCACATCTTTGCAAGGTTGCGCAGCACGTAAAACCTTCCTGGCAACTAGCACCGAGCAGTTCCTTTACCAGAGTAGTCCTTCATCACACGTACAAAGAACTGTGTCTTGTGAGGGAGGATGTCTTTGAACTGACTTTACAAGACCTGGATTTCTCGCTCCATCAAGACCTTCGAGCCTGTCCCTGGACGCTGTTTGAGTTTTCGAATGCAGTATCGTGGTGCAAGCTTGCTGAATTGTGCTTGAGCATTTTAGTCAATGAAAATGTTTTGCACATGGAACGCGCCCTCAAGACCATACTAAGCTACAATGGGGTACTGGGACAGGGTGTGCTAAAGCTTCGAATGTCCTCAGAGGAAGGTCACCGCAATAGGTATTTACTGCGGAGTACACTGGATGGCAAAAGCAGGATTTGCTTTGTTCTAGCTAAAGCGTTGTTTGCTCGAGTTAAAACGTCGACGTCAAAGAAGTGTCATAATCACAACAAGTTTGTGTCAATAAGGGAAATTTTCACCGGGTCACAAATAGGGCCCTCGAAGTGTTCCCTAAGGTTGACTGCCCCTCACATATCATGGCCCTTAAGAAGTGTGCCATTCGTATTGGTGCCCATAGTGTGTTCCTCGAGAAAACGTCAGACCGCAGCTATAGTCATGGTTCAGCTGTGA

Transcript

alvinactis_v1_g2957

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04733	Coatomer_E	Coatomer epsilon subunit	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006822	Family	Coatomer, epsilon subunit	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10805	COATOMER SUBUNIT EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030126	Cellular Component	COPI vesicle coat	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-