Gene detail

Detailed information of alvinactis_v1_g29101 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g29101	SCAVENGER RECEPTOR CLASS F	chr_15	20464638	20493124	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g29101

ATGTCAAAGTATAGACGGAGTAAAAGAGCTGTACCGATCAATGGCGATCTGACTGCATCTTTACGGGAAGTAGACCTACAAACTATAGAACAACACGACATGGAAATCAAGATACCAAGTAGTGATCGATCTAGTATTGCTTTACTACTGTTCTTGTATGTTTTACAAGGAATTCCTCTGGGTCTTGCAGGATCTATCCCTCTTCTTCTTGCAAAGAAAGTTGGATACAAGCAACAAGCTATTTTTAGTTTTGTATATTGGCCTTATAGTGTCAAGCTACTCTGGGCTCCTATAGTCGATGCTGCGTATTTTTCTAAGTTTGGTAGGAGGAAGACATGGCTTGTACCTGTTCAATATTTGATTGGTATTTTTATGCTGGTTTTGTCCAAGTATATCAACTATTTACTTGGAGAGACAGATAACTCAACACCAAATGTCTATACCCTGACTGCCATATTTTTCTGCCTGAATTTCCTCACTGCAACTCAAGATATTGCTGTTGATGGCTGGGCTTTAACTATGTTGTCTAAAGCAAACGTTGGTTGGGCTTCTACTTGCAATACCATAGGACAAACTGCTGGATACTTTCTAGGAAACGTTGTCTTTCTAGCACTGAGTTCCCCAGAATTTGCCAACAAATATGTACGATCTACACCATCAGTGACTGGTTTCATTGATTTGGCTGGTTTCTTGTTCTTTTGGGGATGTGTATTCCTTGTCACTACAACATTGATTGCACTGTTAAAACGTGAGAGATCAGAAGAGGAAGTACATGGGAAGCATGAAGCTCAAGGGATTATATCCACATATAAGACATTATGGACCATCACTACTCTCCCTGCTGTCTTGAAGTTTATTGTTATTCTCTTAACACATAAGattggttttgctGCAGCTGACTCTCTGACAGGACTAAAGCTGGTTGAAGCAGGTGTTCCTAAAGAGAATCTTGCTATGTTAGCCATTCCAATGATCCCTATTCAGGTCTTACTACCTTTGATTATCAGTAAATATACCTCAGGACCACGACCATTGGATGTTCTCCTTCGTGCCATGCCATTTAGACTTTTCTTTGGTTTAGTGTTTATAGCTTGTGTTTGGTGGGCTAACAATGTGCGTCAACCTGGAGAAGAAGCATTTCCCATGTACTTTTATGCAGGCATATTGATTGTTTATGCCCTTCATCAGatatccctctatcccatGTTTGTTTCTGTAATGGCTTTCCACGCACGCATTAGTGATCCTAAAGTAGGCGGTACCTACATGACTCTGCTCAATACCTTATCAAACTTTGGTGGTAACTGGCCTCCTACATTGGCCTTATGGCTTGTTGATGAGGTATCTTGGACACACTGTGCAGGTCTGGCTAATGCAACAGAGGTTCAATGTAATTCAAAGGCACTTCGTCAGACAAATCGTGGAGAAACTTCACCGTGTTATACCATCACTATGAGGCCTGGCACATTGAATGATCACATTCGTTTCACATGTGTCGTACAAGTGTTTTTAATGTCATGTTTCGCCGCGTACGAATTGCACCCTGGAAGCCAGAATGTCTGTACATTTTCACGTGCAGAAGTTGTTCGTGACAGAATCAGTGAATTGCGATCGTATCGGCGAATTGTTCCAGTATTTGAGTGCAATAAAGCTTGTGTTCGATATGTTCCCAGGACGCTCTACTATGTTTCATATCGTCAAGTTGATCGTCTTGTAAGACGGACAGTTTATAACTGTTGTAAAGGTTGGGCACGTGATCCTGGTCAGCCTGGGTGTACAATACGAATCTCATCCAATCAACGACGTTCCTGTGACGTCAATAATGGTGGTTGCAAGGAGAAATGTGTCTATATTCAAGATAAAGTGGTCTGCGCATGCCATCGAGGGTTTAGGTTAGCCGCTGACCGCTCTACTTGCTTAGATATTAATGAGTGTCTCGTCAGAAATggtgggtgtccatcgcgatgtgttaacactcctggtacatttagATGCGAGTGTGCGGTAGGATTTCGGAAGGTCCCATATTCTAGAAATCAATGTACTGACATCGACGAATGTGGTAAGGGTATGTCAAGTTGTTCTCAAGGTTGTATTAACACCGTGGGCTCATTTAGTTGCTACTGTCGACCAGGTTTTTCATTACAAAATGACAAGACAAGCTGTAAAGCAATTATTTCAGACAGAATACAACCAACATCTTCTCATGTCGCTAGAGACACAAGAGTCAAGTCAATACAAAGTCATCAATCCATTCAAGCATGCCCGTATGGCTATATTGGTCCTGGATGTGAGTTAACATGTGATGACTGTCAAAATGGCGCTCGTTGTGACATCAGAGAAGGTCGATGTTTATGTCCAACTGGTTGGACTGGTTTGACGTGTAATATATCATGTAACTCGGATCAATTTGGACCAAACTGTCTCCTCCAGTGCGCATGTGTAAACGGTGGTAGCTGTGATTATCATACTGGTGTGTGCGCATGTCCTCCAGGATATCGAGGAAAGAATTGTGAAGACGTCTGTCCTGAAGGATTGTATGGACCCAGATGTACATTAAGATGCCAGTGCCCAAACAACCAGCCGTGTTACCATGGCAACGGATCTTGTATTTGTAGCCATGGAAGGAAATGTGATCAAgcttgtccacgtggtcgctatggcaaacactgtggcttggtttgctCCTGTCGTACAAACAACACGCTACGCTGCCACCATGCCGATGGTTCGTGTAACTGTAAACCTGGTTATCGTGGTTCACAGTGTGAAGCAGTGTGTCCACGTAACACTTTTGGAAATAAGTGCGCAATGGTATGTCGATGTCAGGCGCATCAGATATGTGACCACGTGACAGGCAATTGCACGAACTACGAATGCCAAGCAGGACTGACCGGATCGAAATGTCTCATGGTATGTCCGCAAGGTACTTATGGTCCTGGATGTCCCAGTAAGTGCCAGTGTGGACCAAGTATCAAGTGTGAACCTATAAATGGAAGGTGTATTTGTTCTGCAGGCAAAATGGGCTCAAGATGTGACCAAGAATGTCCCCAAGGCACATATGGCCCTGGATGTCCCAGTAAGTGCCAGTGTGGTCCTAATATTGACTGTGACCCTGTAGCTGGAAGGTGTATTTGTCCCTTGGGTAAAATGGGCCCAAAATGTGACCAAGAATGTCCCCAAGGCACATATGGCCCTGGATGTCCCAGTAAATGCCAGTGTGGTCCTAATATCGACTGTGACCCTGTAGCTGGAAGGTGTATTTGTCCTCTGGGTAAAATGGGCCCAAAATGTGACCAAGCTTGTCAACATGGTTGGTTTGGAAGAAATTGTGCACAACGTTGCGGGTGTCCAGGTGGTGTCCTATGTAACCCGGCCACGGGATCATGCTACTGTCCCGCGGGACGCACAGGCAAACGATGTGATACATGTGTACATGGTTTCTATGGAGATGGTTGTGTCATACCATGTGGTTGTCCAGGAAACAAGTCATGTGATCCTGTGACCGGTCAGTGTTTGTGTTTACCAGGAAAGACAGGTAGAATATGTGATCAGGTGTGCCAACGTCTCCGTTATGGCGTTAGCTGTGGTCAGCGGTGTGAATGTGAAGAGGATGCGCCATGCGATCGTGTTAGTGGCGCttgtctatgtccacaaggaaccacgggtaaaagatgcgagaaagGTGTTGGTTGCCTTGATTCACGTGATTATTGCCTTCACAATGGTACGTGTGAAACCTCGACTGGTTTATGTCTGTGTAAAGCTGGATGGGCTGGACAACATTGTGAAAGAAAATGTCAAGAAGGACGTTATGGTAAAGGATGCCACAATACTTGTAAATGTACCTCGTATGAAATATGTCACAACGAAAATGGAAACTGTACCAGAGTCTGTCCTCGTGGTTTCTATGGACAAAACTGTAGTGACAAGTGTAGTTGTACGAAGACTGCCATATGTGATCCTCGTACTGGCGATTGTCTTTGTCAACCGGGTGCATATGGACCAAAGTGCAGGAAAATTTGTCCACAGGGTCATTATGGCAGGAATTGTTTATATAACTGCACATGTTATGGAAGTGTGCCATGCGACCCTAAGACAGGTATCTGTCTTTGTCCTGCTGGTAAAATAGGTGCACAATGCGAAAAAGGTTGCCCTGACAACAGTTATGGACCCAATTGCAAGAAACAATGTAAGTGTTACTATGGCAACTGTGACCCCATGACAGGAGCATGTCATTGTAAGCTAGGTTACCAAGGACGCTATTGTGAACAAGAATGTCCAAAAGGAACATTTGGCAAGAACTGTGGCGGCAGTTGCACGTGCAATAAGCATGCCATCTGTGATCACGTGACAGGGAAATGTCACTGTGGGATCGGGTGGACTGGATTCAACTGCGAAAAAGcctgtccgcctggcttttaTGGTTTTAACTGTGAACACAAGTGCGGGTGTCAGAACCAGGCCCCCTGTGATCCTGTTACCGGATGCTGCCTATGTAGACCGGGGTGGCATGGAGACAAGTGTCAATTTAGCTGTCCGTCAGGTCGATATGGTTTGTATTGCACCAAGAAATGTCAGTGCAGTAATGATGGACTGTGTGACCCAGACACAGGAAGCTGCTTTTGTAaacctggatggactggggatgattgtaagcatgAATGCTCGCCTGGTAAATATGGCATTGAGTGTCTTTCTCTCTGTGGTCATTGCGATGCTGTGTTTTGCGACTCTCAGACAGGACGATGCATTTGCCCACCTGGCAAAACTGGCTGGAACTGTAAGGAAGAATGTCCCAAGGGCACTTATGGACCAGGGTGTCAGAACCCCTGTACGTGCGCAAACAATTCTACTTGTGATCCAATCAGTGGAAAGTGTATCTGTCAATTTGGGTGGACTGGACCCGACTGTACGAAAGGatttccaatgattatttccaatgattTCGTGACATTAATTGTCGTCATATAA

Transcript

alvinactis_v1_g29101

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF07974	EGF_2	EGF-like domain	Domain	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF13000	Acatn	Acetyl-coenzyme A transporter 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011489	Domain	EMI domain	Interproscan
IPR013111	Domain	EGF-like domain, extracellular	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024371	Family	Acetyl-coenzyme A transporter 1-like	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR042635	Family	MEGF10/SREC1/2-like	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24043	SCAVENGER RECEPTOR CLASS F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005044	Molecular Function	scavenger receptor activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008521	Molecular Function	acetyl-CoA transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0035348	Biological Process	acetyl-CoA transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-