Gene detail

Detailed information of alvinactis_v1_g28941 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g28941	RNA RECOGNITION MOTIF-CONTAINING	chr_15	18061863	18080124	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g28941

ATGGTCCGGGAAACGCGCCATCTCTGGGTTGGAAATCTTCCTGAAAATATTCGCGAGGAAGAAATCGTGAAACACTTTACAAGGTATGGCAGGGTAGAGAGCGTTAAAATTCTACCTAAGCGAAGCTCTGAAGGAGGTCGGGCTTCGTTCGTCGATTTTGTGGACATCCGAAGTGCAACTAAAGCACATGAATCTGTTAATCGAATTGGAGATCGAGAACTTAGAACAGACTACAACGAACCATCGAGCGCTAATCCAACTACTATAGGTATAACAACTCGTGTTCATGAGCAGACGGCTCGTCCAGTAACCGGACCTCCACCATCACCCCCTAGGGGTAGGAGATATGAACGAAGGGGAGAGGGATTGTCTGAAGGTCGCTATAGCAGTCGTCCCTATGCATACGAAGGCTACAGTGATGAGGAAAGCAACGTACGAGGTGACAGAAGCAGCAGTGGTGGACGTTACCCTGCACCTGACCAAAAAGGTTATTCACGAACTGGTGAAGTGACGAGTAGCAGTGCTGGGCAGAAAAGATCAACAGGAAAATATGAAACTTTTAACAGCAGAGGTGATAGTCCTGATAATTCTAGCGACAGTGAAAGTGAAAGTAGTGATGGCCCAACACAGTCTGGTAGCTCATCGAGCGGAAGCAGCAGCGAGGAGGAGAGTGAGGCAGAAAGTAGAAGTGGTTCACCAGGCTCGGAAGCTTCCAAGAGCAACAAGAGCTCTTCCTTGTGCGTGAAGAATCTTTCTACAAGATCAAGTGACGGCAGCATCAGAGAGGGATTGTATCATGAATTCAAGAAACATGGAGAAGTTACACGTATTTACATACAAGGAACTGGAAGCAGTCGCTCAGCCATTATTTATTTTAGAAGGCCTGATGAATCTGAACGTGCCATGGAAGTATGTCAAGGGAAAATGTTTCTTGGAGCAGAGATGCAGATACAAACTTGGAATGGAACTTCTGAAAAAGGTGATCGGTATGACCCTAATGACTACCCACCTCGCTACCGTTCAAATGCAACACCACAATTTCCTGACGATGAGTTTGATCCTGGGTGTACCAGAACGTTGTTTGTTGGGAACATTGAGAAAACTACAGCTTATGGAGACTTGAAGGAAGCATTTGAACGGTTTGGAGAAGTTGTTGATGTCGACATCAAAAAACAGCCTGGGAATAACCCATATTCCTTTGTCCAGTTTGCTGATCTTGGTAGCGCAATCCAGGCACGCCGCCGCATGGACAGAGAATTTATTGGACGCAATCGAGTCAAGGTTGGGTTTGGCAAAGTTGCACCTATTAATACTATCTGGATAGGTGGTGTTACTGCGAGCCTTAGTGAACAGCAGTTGGACAGACACTTTGGTCGTTATGGGCGTGTCACACGAGTGGTCATTAATCGTACTACTAGTCAAGCATTGGTAAGCTTTGACAGTGTAGAGTCTGCTGGTATATCACAGGCACAGATGAAGGGAAGGAGTCTGTTTGGCAGACGCGTAAGGGTGGAGATGGTCAGCCGTGACAGTCGACAGCTTTTCTACGACAGTTTACAAAGAGTTGGACAGACAGACAGTAGCAGTACTAGCGGCCGTCGCTATGATGCCTCGCCTCCTGATCGCATGCGTGGACGTGGTGGAGGGTCTGGGTACTACGAATACCGACGCGGTAGCCGTGGCATTGCCCGAGGAGGAATGAGACGAGACGCCAGGGGGTACAGGTCATTTCATCAACGCTCCGACTACGACAATTATAATAATTCCGAGGGGGGAGGGTACCACCAAGATCCAAGACCCCCCAGGGGACCCTATGAAGGGGGACGAGAATTTGAAGGCGATGACTACGACCAAGAGCTCAAGGATTACAACTATCGACGGCAACGTGAACgagagagggagcgagagagggaggACCGTCGCGAGAGACCTCCGCGAGACAGACACGAAGTGGAGTACAGTGACAGTGAGAGATACTACCCTGAGAGGCATGGCCACTGGCAGGGAGAGGGAAGTAGCGCAGGCTCATATGAAGAAGAACCACGTGATCATCGACACAAGAACCAGGACTACTCGGACAAACGTGGCCGTAATAATTACAGCGAGGAACGGGAAGGAGCTGCTTCGTCGGATAATAAATCCGATCCAAATGATCGCGACGAACGACTTCGTGCgaagaaacgagaaaagaagaagagaagactgagacaatcggaggaaagagaagaagaggattacgaggaggaagtctataagaaaaagaaaaagaTCAAAGCTGAAGCTGATTCTCGTCTTGAAGAAAGCATCTCGTCTCGTCAAACAAAGGACGGAGAAGAAGTCAAAGATCGGGGGAGTGAGAGGACCGAGAGAACCAAGAGGAAACAAGACGAAGAACTCGCTCCCCAACCACAGGAAGAACCGCCTCCACCTgaaaagaaaaagaaagagagaaaagaaaagaaagaaagggaaaaagaaaaacgaaagaaaCGCGTTCGTACCCCAGTGGAAGAACCTACTGAAAAACCACGTGGAGAAGAAGGGACCTCGAAAAAACGAAGTTCTGAGAGACTAGAGGGACCGGGGACGAGAGAGTTGGAACCCGTTCCAGTCAAACCGGAACCGGAAGTAGAAAAGAGTCGCTATGACAACCATAAGATGTCGAGTCCTGAAAACGGTAGCAACGATATGGATGGTGAGGACGTCAAATCAAGACGAACAACAGAAGAAAAAATGCCGAGGGAAGATAGAGAGTACGCGAGGTCACCGGATTCTGGTTCCCCACGAAAGTCATACCGTGACGACAAGCGAAGGGAAATAAATGATCTTGAAAACGGAAAACCAAAGAGAAGGCGCAAGTCACACGAGGActcccctccccctcccccacctccgcctcccccaccaccacccctAGAGGAACCTGTTCCTGTCGCAACAGAGAACAACAGAGTAGCAATGGCGGATGGCAGGACAAGTCAACCAACAGTACGCGTGACTTACGACTCAGTTGGCCCATCTCCGATACGTGGTGATACTCTATCATACGATGTGTCTCCACGTAACAGAACCCCGGTGGCTACTCCCCCTGGGATGGGAGTGTTACCAGGAGCCAAGCTTCCACTTCCATCCACTCCACCCATGACTACAGCATCTCCAGTAGGGCTACCCCCTGAACCCCACATGAGTGCACCCATAGCGACACCATCGCCTACAACGGCAccacctccacctccaatccaaaactacaacccaacaccaTCAAACCAACCCGCCAATGCTGATACGTTACTGGAGCTTCTACGTCGCTACCCAGTTGTGTGGCAAGGTATGGTCGCACTCAAGAATGACTCTGCAGCTGTTCAAATGCACTACTTGTCAGGTAATGCTCGGTTGGCTGAAATATCATTACCTCAGGCGCCCAATCCTCAAACCATACCGCCACTTCCTCCACCGCCCTTACGAATCGCGCAGCGTATGAGACTAGAGGCATCACAGTTGGAAGGAGTTGTTAGAAGAATGCAGAGCGAGAATGAACACTGCCTGCTACTCGCGTTACCATGTGGGAGGGATCCACTAGATGTACACACACAGACGCGCGCACTCAAGAATGGGTTCATCACTTACCTACAGCAAAAGCAAGCGGCCGGGATTATAAATGTTGCTAGACCGGGTAGCGCTCAGATAATGTTTGGCTTTGGTTTTCGGCCGTTTGAAGAAGACCCGTTCTTTAGAGACCATCATGAAAGGATGAGACAAGCCTTTGGTGGCTTTGGAGGGTTTGACAGGAATTTTGGACAAGATCCCTTTGCTCTTCAAGGTCCACATAATGAAAGTCAAAGGCCACAAGATGGTAGAAACATCCAGCATCCAGGGATGGACAGCGCTGTTGCACCCATGAACATGTTTGGTGGAGGGATGATGGGGATGGGTTCTATGTTTCACAACATGGAACAACAATTTGCCAGAGCTGCCAACGACCCAAACTCCTTCTCCTATACCCAGTCTTCTGTAATGAGCTACTCCAACGATGGCAGAGGGGAGCCTAAGTACTTCCAAGCTCACCATTCAACCAAGAGGGCCCCTGGAGGGgtaaaagaaacaaagaatgctgtgaaagactcagatacaggactacaaCGAATGGCAGTGGGACATCATATTGGTGATAGAGGCCATGTTGTTGAACGGTCATTAAACAGAAGGACAGGCGAAGAGCAGAGGAAACAGGACTTTATCAACATGGATGAAGGGAATGCGAATCAGTTTCAACAAGAGTGGACCACAAAGACGAGGGATCATGCTCCCACTCATCTAGACGACAGACGCAGGCATAGACACAGAGCCCTTGAAGACTCGAGTCATGGTCGACGTGATCGTTCCCGTGAAAGACTCCCTGAGCACGACCGTGAAAGAAGAATTCGACATCAGCACCGTCCAGTTAACAGGCACGCACCAAGGGGTGGTCTGGACTGA

Transcript

alvinactis_v1_g28941

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF07744	SPOC	SPOC domain	Domain	Interproscan
PF10248	Mlf1IP	Myelodysplasia-myeloid leukemia factor 1-interacting protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR010912	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR012921	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan
IPR016194	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR019376	Family	Myeloid leukemia factor	Interproscan
IPR034172	Domain	SHARP, RNA recognition motif 1	Interproscan
IPR034174	Domain	SHARP, RNA recognition motif 3	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-