Gene detail

Detailed information of alvinactis_v1_g28823 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g28823	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	chr_15	16457113	16485797	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g28823

atgctcgaggatccagcggtttttgtcccgctcgaagtcaccggcgaaacaacccgctggataaattacctactaTGCCCAAGCTCTGCTGCGACACTTCCATGTGAGGTGTGCATGGCCCAGAAAGGACAACCCTGCGACAGTGTTGATGTGGATGATTTGTTTGATAATCTAGTTGAGGCCAATGACATTATTCTGGAAGAAGTGGATACCAAACTAGATGAGGCATCTGGTTTATCCAAGAATAAGAAACCAGTAATAAACCAGTCAGTCCAGTCCAGCAAACCTGTTGTGTCTAGTTGGAATCGACGAAGTTTTGAGAGTGGTAAAAAGGACAGCCCAGTGCGGCTTCTATTGGCCAAGAATGTAACTCGACCACAGTTAAATTTTAAAGACAAAGTTGATAACACCAATACCCCCTTTGTACCGATACTAAAGCACAAACCTAATGCTATTAAACCACTGCAGTTGTATACGCCAGACTCAGCTATACCAGAAGACCTCAGTTTACCAACAGCCATAGCAGATTTTGTTCATCAACAGAGAATAAATAGCAATAATGTCACCAACAGGATCAGTCACCCTTATGAATATGAATTAGAAGCCTTTGAACCACCAGAAACTCAACTAAAAGAAGAGAAAGAAAAGTTGTACGGCAGTCTAGAGGAGACTCCATGTACATACGTGAAATCAGTAGAACAGCTGGAAGAGCTTAGCCAGACACTTGCAAGTGTCACTGAATTTGCTGTGGATTTAGAGCACCATTCATACCGAACATTCCAGGGATTTGTCTGCCTTATGCAGATATCAACCAGAGACCATGATTACCTCATAGACACACTGGAGCtacgcagtgaattaaatatcctcaatgaatcttttacaaaccctaatatactcaagGTCTTTCATGGTGCTGATATGGATATTTTGTGGCTGCTTGAGACTTTGGTTTATATTTATCTTCTTAAGAAGTTCTGTGACGTGTCTGCGGATAAACAATATCAGCTGGCGGACTGGAGAATAAGACCACTGCCTGCAGAGATGTCTCACTACGCTAGAGAAGACACACATTACTTGCTGTACATGTACGATCGTCTACGGAATGAACTCATTCGAAGTGGCAATGCCCAAAACAACCTACTGCTGTCTGTGTACCAAAGGAGTAAGGTTGTTGCTCTAAAGAAATATGAAAGGCCTTTATTCACAAGTCAGTCCTACCTGAACCTGTATACGAAGCAGAGAAGACCACTAAACCCACAACAATTGCAAGTGTTTAAAGCTCTCTACGAATGGAGAAACACCATAGCAAGACAAGAAGACGAAAGTTGTGGCTATGTTCTTCCAAATCACATGCTGTTCAACCTTGCTGAGAGTCTACCACGGGAGCCGCAGGGTGTGTTAGCATGCTGTAATCCCATTCCCACCCTGTTGAAGCAGTTTGTCATCGAAGTCCATCTGATCATTCAAAATGCAAAAGACAGCTTACCCTCTACTACTGATGGTGATTCTACAAATACAGCAAAGAACAAGTCAACACAATCTACGACACCTTTGGCTACACTAAAGAAGATACATGATGTACCAATGGAGTCGAAGAGAGATGGTCGTCATAGTATTAATGGAGATCAAATGACCACACCCTCCAAAACTGCGCCATGTCAGGGCTACACCCCAACAGGACCAACAGTTGGAATTGCGAAACCAGTCATCTCTCTATTTGATTATCCTAAGGTTTTACCAACTCCAGAGCCATCTGTCACTGGTAATAACAACAGAGCTGAACAGTCCCAAGCTAGTATCAATGAGATAAATCAAAAGTGGAAGAAAACATCAAGTGAAGCAACCACAACGAAACCAAGCACTTCACAAGCCAAGAGTTCGGGTTCAGAAAGTGACAGCGAGCAAGAAGATGAAATTCCACTTAGAAAACAATTGGaaggaaaaaagagaaaacgaaaagagaaaaccaagttagaagagtcctcgaccaaagacaaaaagaaaaaGACTGGCAACAATAATGATGATGATAATGAGGACCACAATCCTTCATATGAGGCTCTTGCGCACAAACCCAAAGAATTCGTCCCTTTTGACTATAGCCCTGGAAAATCTAACAAAATTGAAGGAGATAAAAGTCAAACCAAGACGGAAGTTTTCGATCCTTACGAGCAGAGTAAACGACAGAAGAAAACTAATGCCCCTCGTTCTAAAGTACACCTGAAATCTGGAGAAAGAAGTATGACATGGTCGAAACACAGGACAATGACGGTTTCAGTATGGCTGAGACGGTTTGCCGATTTCTTGCCGATTTTCTACGCTGTATTGACTCGCATTATGTTCTTTATTCATGGATTCGTTGCTGTCTGGTTGGTTGTTCACTGTAAGAATGAGAAACAGTACTGGTGGCTGATGGTTGGGATTAGCTTACTTGTTGTTGAGATGTGCTATACTTTGGTAGCTCGTAAAGGCCACGAATACAAATAtttctggccgagttgttttTTCTACATGCTGACAATGGTTCCTATCATATGGATACTTGAGACAGACCTCTACTTCGCTAGAGTGTCGACTACACAAGATGTGAGTACATCAACGAAACAACTGGCTGGGTGTTGGGATATCGGTATCGAGCCAATCACAAAGAAGTACTGCGAACTTGGTCTCATCATTATGATCATACTAGGGCGTTGGCTCCTGCCACGTGGTGAAATAACACGTGACCAACTATCGGCATTGTTGCTAGGATACGTTGGAACAGCCGCTGATATTTTGGAATTGTTTGAAGTCTTTGAAGAAGAAGCTGTTGTTGGTGAATGGGAGATTACTAAGGCAGTACTTGGTGTGTACTCCTGGAGTCTGATACAGTTTACACTAGTTACCACGGCAACGACGGGCAAAAACAACCAAATAAGAATCACTGCAAACAAGGTCGATTCAACTCCATCTCCCGAAGAAATGTTCAACAGAAAAATCAGCTCTCACAAAAGCCCTCATTTAAAGGCAGGCGATGAAGACATCAAAGAAAAGTACATCCAAAGGCTACGCATGAAGCGACGGCAGACATACAAAGATCTGACTCGAGGCAAGGGATTCAAGGGAGTTCGGGAGCGCAAAATCAACCCAATCACAACCGGGCGAGGCGATCTGAAGGAGATCTCGCGCAGAGAGATGTTATTACACGGGGACATCTTTGGGATCCTTACCGGCATCTTTATGCAAGATGGTCCCTTTCTTGTCCTTCGGCTGGTTTTGATAATCAAATTTAGTGTCTACAGTGAGATGCATATCTTTTTTACTTGTAAAAATGCGATCGCTTTGTCGTTGCTTATGTATAGACTGTGTATTTTGACGTGTAGCGGTGAGGATGAAGTTATAAACGAGCATCAGGAAAACGAGTGGCGGCTACAGAATGTTCAGCAAGCCGTCCATAGTGATCAGTTTAAGGCGTCTGGTGCTATACAGCTTGCTGGATGA

Transcript

alvinactis_v1_g28823

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00570	HRDC	HRDC domain	Domain	Interproscan
PF01612	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan
PF09772	Tmem26	Transmembrane protein 26	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002121	Domain	HRDC domain	Interproscan
IPR002562	Domain	3'-5' exonuclease domain	Interproscan
IPR010997	Homologous_superfamily	HRDC-like superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019169	Family	Transmembrane protein 26	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR044876	Homologous_superfamily	HRDC domain superfamily	Interproscan
IPR045092	Family	Exosome complex exonuclease Rrp6-like	Interproscan
IPR049559	Domain	Rrp6-like, 3'-5' exonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000176	Cellular Component	nuclear exosome (RNase complex)	Interproscan
GO:0000467	Biological Process	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0044237	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0071035	Biological Process	nuclear polyadenylation-dependent rRNA catabolic process	Interproscan
GO:0071036	Biological Process	nuclear polyadenylation-dependent snoRNA catabolic process	Interproscan
GO:0071037	Biological Process	nuclear polyadenylation-dependent snRNA catabolic process	Interproscan
GO:0071038	Biological Process	TRAMP-dependent tRNA surveillance pathway	Interproscan
GO:0071039	Biological Process	nuclear polyadenylation-dependent CUT catabolic process	Interproscan
GO:0071040	Biological Process	nuclear polyadenylation-dependent antisense transcript catabolic process	Interproscan
GO:0071044	Biological Process	histone mRNA catabolic process	Interproscan
GO:0071051	Biological Process	poly(A)-dependent snoRNA 3'-end processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-