Gene detail

Detailed information of alvinactis_v1_g27038 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g27038	INACTIVE RHOMBOID PROTEIN	chr_14	15214588	15228872	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g27038

ATGCTTAACAAAACCAAAGACAAGACGATTTTGTGTGGCGACAAACCCCAAATGTTGACAAATGCTGACAAAGAACTAAGACCTCTTGTAGGAGAAGATATCACACTGCATTGCTATGCTTCAAGCCAGTCAGAAATCCTATACACTTGGAGAAGAGACAACGTTTTGGTCCAAAGGTCCAAAGATGGAACTCTTGATCTGCGTGATTTGAAAGAGGCAGACCAAGGGCGTTATAGGTGCGAGCCCAGAAATCACAAGGGAAGTGTATTTTCAGAGATCACAACGATAATAGTCGAAGTAAGGCCACAAATAATGGAGCACCCAGAAGCTTCCCAGGTGCCATTAAACAGCGAGTCAACTGCTTCTTTATCGTGTGTTGCATCTGGAAAACCCATACCTACTATAACATGGCTATACAGGCCACCATCTTCTAACATCTCAATAGTGTTACCTAACGAAGACAGTAATATTCTTACCGTGATTCCTGACGACACGGAGAAAGGTGGGTACTACTACTGCGAGGCTACGAATTCCAGAGGTGTGGCAGTTAGCCGTCAAGCAAGAATTGATATTTTGGCTGTTACGGCAACTAATCCCAAAATGGCTATTGTCTTTAACGTCACAATCTCGTGCAAAGCGAGAGGTTGTCGAAAGCAGCAAAACATTCCGTCTCGACTGGATGATACACTGAAAAACAGCATAAGAACCATGATAAGAAAGTCGATGGGTTTGCCTTCAAGAAGCATCTCAAGACTGAGATACTTGCCTGGGTCTAAATCAATAGCACAGCTAATCCTGTTTATATCGACACCTTTACGTAACGTTCGAAAGGATCTTTCAAATCCTCAAACGATGGAAAGGTTTGCTGAAGCACGAAGCAACCTTGTTGGTAAATTAAAGCGATTGGTCCATGCCATGAATAAAACAATCTTGCTAACTAGCAATCCTGCAACACGTCTTGTTGGCTTAATCAAGACGCTCGGCTTTCTACACGTTGAGCCCGACTGTCCTCCTGGTCAGTGGCTACACAACAAAGGCTATTTCTGTGTCCATTGCCCACCTGGATCTTATAAAGAAGGTCTACGAGGAGCTTGCATTCGATGTCCACTAGGAGCGTATCAACCGCAAACTGGACAGATGGCCTGCATTCCTTGTGGACCCCACAAAACAACTCTACGTGAAGGCACCATCGATAGCACAAGCTGTATCATGAAAGCTGTTTGTCCACGAGGATCGTTTTCAACAAAGGAAGATCAGTGTGTCAAGTGTCCACCCAAAACATACCAACCCCAACTAGGTCAAACATCGTGCATTCCTTGTACCACGGGACCTGCATCTCAAGAAGGGCAAACAACATGTGAAAAAGAAACAGGTCCTGGAAAACCTTACAGCTTGATGATATTCTCGCTGTCCAGTTCCTCAATCAAGACTATGTGGTGGAAACCAAGATCGGGTGATGTCAGTCACTACGAGCTCGAGTACGGATATCCAGGAAAGAGTGTTTTGGCTACGATAAGGATTTATCCCAGTAATCAACCATCTGGTGTGTCACAGTACATAATCAGAGGCCTTGAAAAATACACGGTGTACAAGTTGAAAGTGTATGCAGTGTTGGATAACGAACGTGGGAAACCTGCCACTTATGATTTCCGCACCCAAGAAGATGTTCCGGACGCGTCGCCCCAAATCACTTCAGCTGTGGCTCTCAATTCATCATCCGTCGAAGTGAAATGGAAAGAACTTCCCCTTCACGCAAGGAATGGTATCATTCTCCGCTACACGGTCTACTGTAAAGCAAGTGGTTACGCTGCATTCGATGACAAGAAAGCGGGAAGGAAAGAGCTCTCCACGATATTGACAGATCTTAAGGGAAACACTCGTTACTGCATTAAGATGACAGCGTCTACCAATAAAGGAACGTTCCCGTATTGGCAGGATAACCGGTGCTACTGGGTCAAAACAAAGCTGAAAATAAACATattacttatgattgtggtgtcgcctgctctcacttgtggacttttcttttcttctttctttggttTCCCTGGAGGTACGCGACGCGTCCAGGTATTTTGGCCTGTCTTTACTGTTATTCAAACTTCAAGTCAAATCTTTATGGTTGTGTGGGTTTGTTGGAATGGAGGAATCACAACGTTTGGTGTTGCTCCAGTATATCGTGTAAGAATAGaaccattgactctgaaaggggttacctacattagccacacccatcaccctaacccttgGCTTGGTCCATCACATGCCAAACTAATCCATTACGGTGCGGTGTATGCTCCATGTATGAGGACAGACTATCGGTACAACTTCCAGTTCGTCACCGCATGGAATCGGCCATCAGAGGAACCAGGGACGTTAGGGTGTTGTGAACAGCCTACCATGAATATTGCTGCAACAACAACCGAGGGTGAATGCTGGTCAGCGGTGTCTAACAATACAGGGAACTGGAAACCAACGGCGTGTAGTCAACGACCAATAGGAGAAAACTTTGTCGCGCACGTGATCAGGCCGTGTTGTGTGAGTTTGACGAACGAATGTCACATGACAAGTCCACAGCACTGTTGGTTTATACAAGGGACTTATCACTTCCATGCTGACTACTGTTCACAGGTCGATTGTCTTAGTTCCAGATGCTCCATTGACCCAGTTCTTAAGATCCAAGATGACCATGGTTCATATTCTTTACCGCCCTCCTATCACCAATGGTGGCGATTTCTCTCTGCCATCTATGTTCCCCAGGGGGTCATAGACGGGGTCCTAATTACCGTGATAGGATTCCCGTTCAGTTGGGTTCTTGAACGCAGAATTGGTTGGTTGCGCATGACTCTCATACATACAACCGCTGGTGCAGGAGGACACATGGTATCGAAGTTATTGGCTTTTGAGAGTCACAAGACACAAGAGTCCTCATCACTTCCCGAACTCAGTTGA

Transcript

alvinactis_v1_g27038

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051512	Family	Inactive Rhomboid	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45965	INACTIVE RHOMBOID PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0042058	Biological Process	regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0050708	Biological Process	regulation of protein secretion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-