Detailed information of alvinactis_v1_g26169 in Alvinactis idsseensis sp. Nov. Gene info
Gene IDAnnotationChromosomeStartEndStrand
alvinactis_v1_g26169PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5chr_1418229041867883+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575S1S1 RNA binding domainDomainInterproscan
PF05843SufSuppressor of forked protein (Suf)RepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003029DomainS1 domainInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR004827DomainBasic-leucine zipper domainInterproscan
IPR008847DomainSuppressor of forkedInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR045209FamilyrRNA biogenesis protein Rrp5Interproscan
IPR048058DomainrRNA biogenesis protein RRP5, S1 domain, eleventh repeatInterproscan
IPR048059DomainrRNA biogenesis protein RRP5, S1 domain, first repeatInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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