Gene detail

Detailed information of alvinactis_v1_g25452 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g25452	PROTEIN CBG23764	chr_13	18282151	18342845	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g25452

ATGGCAACAGATAGTGGTGTAGATATAGATTTATATGCTGAAGTAGGAGATGAGATAGATCATGATATCAGTGGCCAGCATGATGGAGCAGTGGACCTTTATGATGATGTACTAACGACATCTGCTGAACAACAAGCTGAAGATGAAGCTCTTCAAGGCATTGTTAGTTATTCTGGAGATCTGGCAGTACAAACACAAGGTGGATATGAATATAAGTCTTATACCACGGTACATCCAAAGTCTGCTGCATCACAAGCTGCACAAAGTCATTATGAGCGTCAGCGAGGGAAGCCTCTCTATGTTGGTAATTTAACATGGTGGACAACAGACCAAGAACTAACAGAAGCTCTTCAAGAGTGCGGCATTACTGACCTGGTCAATATCAAGTTCTTTGAAAACAGAAATAATGGCCAGTCCAAAGGGTTTGCTTTGATAGAACTTGGCTCAGATAAGTCTGTACAGCTTGTTACAGAACATTTACCAAAAATTGATCTTCATGACCAGAAACTTGTTGTTACTCCAGCAACAAAGCAGTATCTACATGAATTTGAAGCTCAGTCCCGTGCCAAAGCTGGCTCTGGATCAAACTACCAAGGACCACCATTTGGTCCTGATGGACAACAAGGGCCAGGTTACCATGGCATGGGGGGTGACAGAGGTAGAGGCTTCTTTGGCTATAACCGAGGGGGATTTAGAGGGCGTGGTGGTATACGGCCAGGCATGGGGAGAGGTTTTGATGGTGATCGTGGAGACATGGGTCCAAGAGGTCCATGGATGGGTATTCCTGGTCAAATGGGTGGCCCAAGACCACTTCACCATGGGATGCCACCACATTTTGGAGACCAGCAACCACCACCATTTGGCATGAATCCAAACCTGGGCCATTTCCCAAATCAAGGGATGGGTGCAGACAAAGGGCCAGGGCCAATGCCTCCGCAGATGGGCATGCCACCTGGTATGCCTGGGGTAGGAATGACAAATGACCCTTACTTTGCAAGAATGGGTGGGATGTCAAGACCACCTGTTGCTCCTCATGTGAATCCAGCATTCTTCCCCGAAGGACCACCTCCTGACTTTACTGCCATGTCTATGGGCAACAGAGTAGATCCACAGTACCAGGGAAGGCCAGATGAATACAGTGAGAGTATCAAAAGAAACAGTGCTGTTGCAAGTAGCGCAATCAAGAAGGCAATGGCTGATGCTCACTCTGGTGACAATGAGAGTGGAATAGAAACCCTTGTGACAGCAATATcactgataaaacaatcaccatcagccaatgatgaaacatgccagATGTTAGTTCAAAATCTTCAAAGTTGTCTTCAAGGCCTGGAATCTAAAATGCTTGAAAGAAGTCTTAGTCGAACAAGCAAAGATCGTTATGAAGAGAAAGAAGACTACACAGGTAGTGACAGTTCAAGAAGACACCGTCGACgacgatcaagatcacgtgagaaaagatctcggtcacgtgatagacggtcaagatcacgtgacagacACAGTAGGAGTAGTAGAAGtgaacatataaatattaaaacttgccaaaaagagcatagttcagatttgccgagcgcttgtcgatgtcctctcgaaggttttaaatcccataatagctgtaagcatgcagaagatgaatcttatacagaaaagtatcagacgcataaaccatccggattttgctatgggattaagtcttctgatgatttgttcaaaccaaagattgttagatacacggcaacagatgaagatgaagatattggcaagttgtttgtagaatgtttagaaaaagatattagaaaacttgctgagataaaaacaaagcctattttgatgacaaaagagaacaggaaagattatgagaatgcagctgactgtttcatttgtaatcaaaagttgaaagaagataaagttcgcgaccacaatcatttgacgggaaagtatcgcggagctgctcatgctgtttgtaatttaaactatagaattcctaaacacattccagtgatatttcataatttggctggatacgatgctcatttgtttataaaaagtttaggattttcggaaggcaaaattgattgtattccaaataatgaagagaagtacatctcattcaaaaaggaaatagttgtaggtagttgggttaaagatggtcaaacaattctcatcaaacgcgaacttagattcattgatagttttaagtttatgtcatcaggcttggataggctggtggcaaatctgaaaaaagaacagttcagaaacatgtcgaagttcttcacaggaaaaaaactcgatttgctgttgagaaaaggagtttatccttatgattatgtgaatagtttgtcaaagttggatgaaacaactttgccttcaaaagaagagttattttctaaacttaatgacacggatatttcagaagatgattacaaacacgcacagaaagtttggcgtgtttttaaaatggaaactatgagagattatcacgatttgtatcttctttctgatgtaattctactgatggatgcatttgaagcctttagagatgtgtgcatggaaaattacaagctagatccgtgttggtattatacagctccaggtttgtcttgggatgctatgatgaagatgacagagatagaacttgaacttttgaatgatgtggatatgcttctaatgattgaaaaaggaattagaggcggtgttggcatgattacgaagagtgccattctgaagttgtacgaggatcttgggatgaaggtaaaagtacgcagaggaattaccttccaggagtcagactggctgaaaaagtatataaacttgaacacggaacttagaacagcagcaaagaatgactttgaaaaggatttctttaagttgatgaacaacagcgtgtttggtaaaactatggaaaatattcgtaacagacaagatattaaacttgtaacaactgagaaaatggctgcaaggttaatctcacagccgaattatcacaggagaaccatcttttcagaacatctctgtgctattcacatgagaaaaacagaattgatctttaacaagccagtctatttgggaatggttattctagatcagtcgaaagcgctcatgtatgattttcattataactactttaaaaagaagttcaaaagtagtaagttgctgtttacagatacagacagtcttatgtatgagataaaaacagaagatttctataaagatattaaaggtgatattgatgagagatttgatacaagcgcttatccaaaagatcatgcaattggcaagtgggtcaataagaaagtaataggaatgatgaaagatgaaactgctgcagccggcgaaataactgagttcgttggtttgagaagtaaactgtacgcttacaaaatagatgaaaaagaggaaaagaaatgcaaaggtattaagaagtctgttgtaaagaatgatattgaatttgatgattataagaattgtctgttctctggagagaaagtcatgcgaaagatgaatgtgattagaagttacaagcaccaactcttttcagaaacagtaaataaagtagctttgagtagagaagatgataaaaggattattctttcagatcaaattcacacccactctatctga

Transcript

alvinactis_v1_g25452

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR034769	Domain	Cleavage and polyadenylation specificity factor subunit 6, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31511	PROTEIN CBG23764	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-