| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| alvinactis_v1_g24929 | COLLAGEN | chr_13 | 10816338 | 10820579 | + |
| CDS | |||||
| alvinactis_v1_g24929 | |||||
| Transcript |
| alvinactis_v1_g24929 |
| Protein |
| alvinactis_v1_g24929 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF02140 | Gal_Lectin | Galactose binding lectin domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000922 | Domain | D-galactoside/L-rhamnose binding SUEL lectin domain | Interproscan |
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| IPR043159 | Homologous_superfamily | D-galactoside/L-rhamnose binding SUEL lectin domain superfamily | Interproscan |
| IPR050632 | Family | Nematode Cuticular Collagen | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24637 | COLLAGEN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0030246 | Molecular Function | carbohydrate binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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