Detailed information of alvinactis_v1_g24928 in Alvinactis idsseensis sp. Nov. Gene info
Gene IDAnnotationChromosomeStartEndStrand
alvinactis_v1_g24928COLLAGEN ALPHAchr_131079863010799513-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF02140Gal_LectinGalactose binding lectin domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000922DomainD-galactoside/L-rhamnose binding SUEL lectin domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR043159Homologous_superfamilyD-galactoside/L-rhamnose binding SUEL lectin domain superfamilyInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0030246Molecular Functioncarbohydrate bindingInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

TOP