Gene detail

Detailed information of alvinactis_v1_g24640 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24640	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	chr_13	7047371	7085043	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24640

ATGCAACAGTTCGGGCCTAGAGCCTCACAGATGAACGTTGCATGGCATGGACCCCAACCGCCACCATCTTCATCGTACCCCTTCGTCGATCAAACGCGTCCTCCTTCCTCGATGCAACAAGCTCCTTACCGGGGATTATTCGATTATGCTTACCCTCGTGCTAATTCTCCCCGGCTTCAACATTATACCGATCAACAACAAGGTTTAAATACCGTGAACATGTCTCCAGTAGTTTCTCAGGCTTCCAGATTAGGACAACAGCAAGTGCCATCTCCTAATTCGAATATACAGTTCTCAACTCCTTCCCCAGAGAGATCGAATCCTAAACAGGCACAACAACCACAGCAAGGGAGTCCACAGTCACAGCTAAGGCATTATCCCAATATGATAGACTTGAATCAACAGCAGGACATCAGCGGCATGGCAAACTCTGTGCCAGCACCAGGGAAGGATGGTGCACAAAAACCTGGTCAAAATTATTCGCCTTTTTATGGCATGAAAAGTAATAATGTTCCCATGTCCAGAGACTCGCCAGGAAATAGTACAATGGACCCCACTGTGTTTAACTCTTATAATAACCCTGCAATGCATGGGATGGACAGATATATGGGTATGGATGAAAATGCCGAAGGATTTAACCCTATGGCACAGGGACAGGGTTTCCAGTACCCAGGGTACGGTATCTCATCACCGCAGGATTTAGCGCAACTTAAGACATCATCTATACTGATACAAATGCAACGACATCAGCAACAGATTCAACAGTTAAGGGAGTTACCACAGCAACCACCACAAGTGCAGGCACAGATCCAACAACTCCAGCATCAGTTTCAGCAACTTTGCCATGCGTACATGCTACAACAGCAACGTATGCAACAGAATTACCAGATGCAAAATCAGACAAACCAAATGTTTATGAGACAACTTCCGCAAGAGAAAGCTAACAGAATAGCGGTGGAAGCCATGGCAAAGTCTGCCTTCCAAAATGAAGCGAACACGATGATGCCACAGTTCCCTCCATTTCCATCGAATGCCCAACGAAAACCAAGTAATGGCAATAATGGCATGGGAGTAGAGAGAAACATGTCATTCAAATCTTCAGAACCTATTCAACTTGGTCCATCCATTGTGAACAAGCCAGTATCTAGAATGTCAAGACCCCCAGCCACTGTATTATCAAAGCCATTGCCAATGAAGAACAAAAAAGATGATTCAGACTGCGAGCCAACACCACCATCATCGCCAATTTACGGCTTTGAAGATGAGCAAGGTTCAAGTATTACGCGACGATCACTCCGTGAAAGACGCAAAAAAACATACAAAGATGACTTTGATTATAACTTGTCTGATGATGACGGAGAGAGGGACAAACATCCACACGCTCCAATTGTTCCAATTTCACAAACTACTGGTGAAACTGTCCATGCTCCTATCGTGGAAGAGTATGAGGAGACGATGATTGTGGAAAAAATTCTGTCCAAGAGAGTCCGAGATGTCAAGAGTGAAGACGGAGAGACGACTGCACAAGTAGACGAGTTTCTAGTCAAGTATAAAAACTACTCTTATTTACATTCGGAGTGGGCAACGCAGGAGAAACTTAACCGAGGAGACAAACGAATCCAGATGAAAGTCAAACGTTACAACATCAAACAGCAGAACCTGTCGCCTTTCTTTGCCGAGATGGAAGATGAACCATATAATCCTGACTACGTAGAGGTAGATCGCGTCTTAGATGTATCAACTGGAGTTGATCAGCACTCTGGAGAGCCGATTACACATTATCTAGTGAAATGGCGTTCACTGCCGTACGAGGATAGTACTTGGGAAGTAGAGACTGATGTCGAGGAAGCTAAAGTAAAAGAATTCTACAAACTACGAGAACTACCAACAATGCATCTAAGACAGtaccatgcaagaccTCACCCTCACGAATGGCTTAGACTAGAGCAATCACCATCCTTTAAGGAAAGTAATATATTGAGGGATTATCAGCTTGAGGGCGTGAACTGGCTGTCATTCTGTTGGTGTAACAGGCAAAATTCTATACTTGCTGATGAGATGGGTTTAGGCAAAACTATACAATCTATAGCTTTTACATGTCAAATGCTGCGATATGGTATCCGTGGCCCATTTCTTGTTATTGCTCCACTATCAACAATTTCCAACTGGCAGAGAGAATATGAAACTTGGAGTGACATGAATGTTGTTGTTTACCATGGAAGTGCTTCCAGCAGACACTTAATTCAGGAGTACGAGTTCTACTTTAGAGATGAACATGCTCAGCCTATACCTGGCATTTTCAAATTCCAAGTTATTGTTACAACATATGAAATTATTATAGCTGATAACATTCAGTTATGCACTGTACCCTGGAGAGCCGTGATTATAGATGAAGCACATCGACTGAAAAACAGGAACTGTAAACTGCTTGAAGGCCTCAATAACTTGAAAATGGAACACAGGATCCTTCTCACTGGAACGCCACTCCAAAACAATGTGGACGAGCTATTTAGTTTGCTGAACTTCCTTGAGCCAACTCAGTTCCCCTGCCAAGAAGCCTTCCTGATGGATTTTGGAAACTTAAAAACTGAGGGACAAGTAGATAAACTAAAGCAACTCTTGAAGCCCATGATGTTGCGAAGGTTGAAAGAAGATGTTGAAAAGAACATTGCACCCAAAGAAGAAACCATTATTGAGGTGGAGTTGACGACAGTCCAGAAAAAGTACTATCGTGCTATCATTGAAAGAAACTTTGCCTTCCTGTCCAAGGGAGCAAGCTCGTCAGCCAATGTACCCAATCTCATGAACACTATGATGGAGCTACGGAAGTGCTGTAACCATCCTTTCCTTATCAACGGTGCCGAGGAAAAAATCATGTGCGAGTACAACCAATTTGTCAACAACAAAATCGACAGACACATGCATGCAATGATTGAAGCGTCAGGAAAACTTGTCTTGATTCATAAACTGCTGCCCAAACTCAAGATCGGAGGCCACAAGGTGCTGGTGTTCTCACAGATGGTACGGTGCCTGGACATCCTGGAGGATTACCTGATCCATATGAAGTACCCCTATGAGAGAATCGATGGGCGTGTCCGTGGCAACTTGCGTCAAGCTGCTATCGATAGGTTCTCCAAGCCAGATTCTGATCGGTTTGTGTTCTTGCTCTGTACAAGAGCTGGTGGTCTTGGTATTAACCTGACTGCTGCCGATACCGTCATTATCTTTGACTCTGACTGGAATCCACAAAATGATCTCCAGGCGCAAGCTCGGTGTCATAGGATTGGTCAGAGTAAGGCAGTAAAGGTGTATAGGCTCATCACGAGGAACTCATACGAACGTGAGATGTTTGATAGAGCAAGTCTAAAGCTTGGTTTGGACAAAGCAGTGTTACAGTCTATGAACATGAAGGACAATGCTGGAAGCAACGGTTCCATGTCCAAGAGAGAGGTAGAAGACCTACTTAAAAGAGGAGCTTATGGTGCTATTATGGATGAAGACAGTGACGATGGTGCTAAGTTCTGTGAGGAAGATATTGACCAGATTCTGGAAAGAAGAACGCAAGTTATTAAGATAGATTCTGAAGGGAAGGGCTCAACCTTTGCCAAGGCCAGTTTTGTGTCGGCACGAGGGGAAGAAGACATTGATGTCGATGATCCAGACTTCTGGCAAAAGTGGGCCAAGAAAGCTGATCTAGACATGGACTATATAAACAATAAGGACGACCGTATTATCGATGTACCTCGTCAGCGTAAACAGACCAAGCGATATGGTAATGAGGATGGTGATTTTGAACTGTCTGATCTTGAAGACGAAGAGGAAGTCATTGTGCCGAGGAGGGCCGCTTGGACAAGAGTGGAGTGCTTTAGGGTGGAAAAGAACCTACTCATCTATGGGTGGGGAAGATTCAAAGAGATACTTCTTCATGGTCGATTCAAAAGCAAACTTGCCGAGAGAGATGTAGAGTGCATTGCACGCTCTATCCTAGTATACTGCCTACATCATTACCATGGCGATGACAAAGTCAAATCCTTCATACGTGACATCATCAAAGCCTCCATCTTGAGGGATAAAGGTTCCCACGACGACAGAGATAAGACATACTCACCTATCACAACACCGTCAAAGGGTAAAGGGAGAGGCAAGAAGGGCAAGAATACAACCAAGAATTCCAACAAAAGTGCCATTGCTTTGATAGAGGTTGGCTTGGACTGGAGGAGTATGGATGCTGAGACAATTGTGCTGGATAATGGTTACAAGAAGCATCTACAACATCACTGTAACAAGATCCTGCTTCGAGTAAGACTTCTATTCTACCTAAAGACAGAAGTGATAGGAAGCCTAGTACCATTGATCAAAGAAGGGGCATGTGCTAATGCAAGTGATCTAGATATCACCATTTATACACCCGAGGGCGACCCACCCACTGACTGGTGGAACACAGATGCCGATAAGTCACTGCTTGTTGGAGTCTTCAAACACGGTTATGAGAGGTACAACCTCATCAGAGCAGATCCAACGCTGTGCTTTCTATCAAGAGTTGGTCTTCCTCGTAGCGGGGGTGAGCCTTCTGAGATTGATGCAGCAgatcaagatgatagGGATGAAGATGAAGGCAACGATGACCCTGACTACCAACAGCCTTCCAACATCAAAGATGAGGATGATATTCTTGACGAGGACGAAGACAAGGATGCTGTATCTGCTGTCTCATCTCCTGCAACACCAAGAAAAGGAGAAAAGCCATCATCTGATGTGTTAGGTGTGGAGACTACTAGTTCATCTGGTTTAAGGTGGCCATCTGCTTCTGACCTTAATACCAGGTTAAGAAGACTAGTAAATGGTTATCAGAGAGTCCACAGGAGACAAGAAATGAAGAAGGCTGCACAAGAGAAGGAAAGAGAAAGAAAGGAAAAGTTTGAAGAAGCCATCAGACAAAAAGAACAAAAGAAACTGGAAATGGCCCAGAAATGGTCCAAGAGAGAGGAAGTTGATTTCTACAGAACTGTGTCTACATTTGGTGTTGAATATGACAAGGAAACAGATATATACGACTGGTCGCAGTTCAGactacagttctcctttaaCAGACGTTTGGCTCGTCTTGATAAGAAGAATGACGGCAGATTAACAGCATACTATAAAGACTTCATGGCTATGTGTAGAACAGTTTGTGGCAGACCCCTTGAAGAGGACAGAGAAATAAGTGGTAATGTAGAGCCCATCACAGAAGAACGAGCAAGTAGATGTCTGTTTAGAATACAGCTCTTAGCGAGAATACGGGAGGAGGTTCTTACTCATGAGGAATTAGATGAGAGACTCCAGCTTGCACAGCCTTCATCAGATTTCCCAGACTGGTGGATAGCAGGGATACATGACAAAGATCTTATGAAGGGGGTTATCaaGCATGGTCTTGTGAGGACTGATTACCATGTTCTGAACGACCCAGAGTTATGCTTTGCCGAGATCCTAACTAGAATTGCCACCCAAGCGAAAATGGTGGAGAAGACAATAGACATGCTTAACCCAACATCCACCCCACCAGTACCGCCAACTACAGACACTACCGATACACCTAAAGAAACTAAAACATCACCATCTGAAGACCCTCAACCTTTTGACCAGGAGAGCGAAAAAACGTCCATTAATCCATTCCATTCCAATGGAACAGATACAAAGGAAAAACTACAATGGTCAGAAAATAGAATCTCACCCACCCAACAGTCCGACAGTCAATACAGTGTTGATAGTCTCAACAGAACAGCCGAAAATGAGGAGGGTGATGTACCAAATTCTCTGCCGTCTATTGCTTCTGTTGTCAACTCTGTTAGTATAATGGAAGAGGATTCACAGATGAGCGAGCCTACTGAAGGGCCATCAAGTGGTTTTGCTGAAAGTACCATGGTTCCCGTCAAGTGGCCTAAGGACCGTATCGTCATGCAGCGACTGGATCAACTCTGTGACTGTGTACGCAAGGGTATTTGGCCCGTACGACCAAAACCAGAACCCCTCCTCCCCAACCAGCTTGGTGTAACCTCGCCTACAGTCTTGTCCAACATGGTTGACATGGATAGCGCAATGATGCATCCTGGGTTACTGCTCGACGGCAGTAAAGATGACTCGTCCAAGGCTTTTCAGGTCCAGAGGATCGATGGTTTAAAGCTGTCTTTGAAAAAACATAGAAGAAAAAGAAAGAAGGATGGGCTTCTACTCAAAGAGGGTGACACGGACAGTATAGGCAGTGACAGTGATCTAGCAGCACCAACTCATCGCAAACCTCGTAAAATGAAAAAGGAGACCAACTTTTGGTCCGAGCATGCACTAAGCATGGACCTAGCACTACCACATCAACAACCACACATTGGTGACCCTTCCCTGGGAGAGAAGACTCCCAAGAAACGACGACGGAAAAAGGAGGACAAAGGTGACAAGCCTGATAAACCCAATGCAGGCAAACGGAAGGGTCGTAAGCCCAAATCGAGTAAGCTCGGATCTGCGGGCAGTCAAGACTCTGGGGGTACCCCTGTTGGGGAATATTTAGGTCATGATTGGACAGGTGGGAATCTATCATCATCTGTGATGGCAGCCAGTGCTAATCCAGGCATGGCTGATAGGTTTGGTGATATGGCTAACCCTTTGACAGAACAGAGAATAAAGTCAGAAAAATCGGAAAAACATGACAATAGATTAGAAGGACCACAGGGTCCTTTACCATCTCTGTTCACAAGACCTACTGGTGACCCACAAAGATCAAACCCTACCACACCCACGGGAGCTGCAACCCCCACGTCACATCAATTCCTTGCTGGTGTTTATAATGACAGTAGTTTTAGTAATGTAACCAAACAAGAAGACCAAGACTCTTCTGACTCGTCATCACATTCAAGTCCATCGCCGCAACCCAACTCATTCAGCTCACCTGGTTACCCTTATGGTAGTGGATATCAACATGCTTTTGGCCACTATGGTGGGGTACCTTATGCACCCCCATATGGGATGGGCGTGGCTCCTCCAAACCCTGTCAATGCCAAGTCTCCAGTAGCTTCAAGTCCTTCGGCAATGTCTTCACATTTTATGTTTGGCAATGCTTATAGCTCTATATACAGTGCTCAAGGAGGTTATGGAGGCTACCCCTACTTGGGGTTAAACAATGGAGGCTCTGCCGCAGCTATTGGACTTAAAGAAACCAACATAAAGGGAGATGAATGTACATCTCCTGAAGCACACAACAAACCTTTTAGCACTACAAGTGAAGGTACAGCTAAACCACAAAGCAAAAGTCCTAAAACTTTATTAACTTAA

Transcript

alvinactis_v1_g24640

Protein

alvinactis_v1_g24640

MQQFGPRASQMNVAWHGPQPPPSSSYPFVDQTRPPSSMQQAPYRGLFDYAYPRANSPRLQHYTDQQQGLNTVNMSPVVSQASRLGQQQVPSPNSNIQFSTPSPERSNPKQAQQPQQGSPQSQLRHYPNMIDLNQQQDISGMANSVPAPGKDGAQKPGQNYSPFYGMKSNNVPMSRDSPGNSTMDPTVFNSYNNPAMHGMDRYMGMDENAEGFNPMAQGQGFQYPGYGISSPQDLAQLKTSSILIQMQRHQQQIQQLRELPQQPPQVQAQIQQLQHQFQQLCHAYMLQQQRMQQNYQMQNQTNQMFMRQLPQEKANRIAVEAMAKSAFQNEANTMMPQFPPFPSNAQRKPSNGNNGMGVERNMSFKSSEPIQLGPSIVNKPVSRMSRPPATVLSKPLPMKNKKDDSDCEPTPPSSPIYGFEDEQGSSITRRSLRERRKKTYKDDFDYNLSDDDGERDKHPHAPIVPISQTTGETVHAPIVEEYEETMIVEKILSKRVRDVKSEDGETTAQVDEFLVKYKNYSYLHSEWATQEKLNRGDKRIQMKVKRYNIKQQNLSPFFAEMEDEPYNPDYVEVDRVLDVSTGVDQHSGEPITHYLVKWRSLPYEDSTWEVETDVEEAKVKEFYKLRELPTMHLRQYHARPHPHEWLRLEQSPSFKESNILRDYQLEGVNWLSFCWCNRQNSILADEMGLGKTIQSIAFTCQMLRYGIRGPFLVIAPLSTISNWQREYETWSDMNVVVYHGSASSRHLIQEYEFYFRDEHAQPIPGIFKFQVIVTTYEIIIADNIQLCTVPWRAVIIDEAHRLKNRNCKLLEGLNNLKMEHRILLTGTPLQNNVDELFSLLNFLEPTQFPCQEAFLMDFGNLKTEGQVDKLKQLLKPMMLRRLKEDVEKNIAPKEETIIEVELTTVQKKYYRAIIERNFAFLSKGASSSANVPNLMNTMMELRKCCNHPFLINGAEEKIMCEYNQFVNNKIDRHMHAMIEASGKLVLIHKLLPKLKIGGHKVLVFSQMVRCLDILEDYLIHMKYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMNMKDNAGSNGSMSKREVEDLLKRGAYGAIMDEDSDDGAKFCEEDIDQILERRTQVIKIDSEGKGSTFAKASFVSARGEEDIDVDDPDFWQKWAKKADLDMDYINNKDDRIIDVPRQRKQTKRYGNEDGDFELSDLEDEEEVIVPRRAAWTRVECFRVEKNLLIYGWGRFKEILLHGRFKSKLAERDVECIARSILVYCLHHYHGDDKVKSFIRDIIKASILRDKGSHDDRDKTYSPITTPSKGKGRGKKGKNTTKNSNKSAIALIEVGLDWRSMDAETIVLDNGYKKHLQHHCNKILLRVRLLFYLKTEVIGSLVPLIKEGACANASDLDITIYTPEGDPPTDWWNTDADKSLLVGVFKHGYERYNLIRADPTLCFLSRVGLPRSGGEPSEIDAADQDDRDEDEGNDDPDYQQPSNIKDEDDILDEDEDKDAVSAVSSPATPRKGEKPSSDVLGVETTSSSGLRWPSASDLNTRLRRLVNGYQRVHRRQEMKKAAQEKERERKEKFEEAIRQKEQKKLEMAQKWSKREEVDFYRTVSTFGVEYDKETDIYDWSQFRLQFSFNRRLARLDKKNDGRLTAYYKDFMAMCRTVCGRPLEEDREISGNVEPITEERASRCLFRIQLLARIREEVLTHEELDERLQLAQPSSDFPDWWIAGIHDKDLMKGVIKHGLVRTDYHVLNDPELCFAEILTRIATQAKMVEKTIDMLNPTSTPPVPPTTDTTDTPKETKTSPSEDPQPFDQESEKTSINPFHSNGTDTKEKLQWSENRISPTQQSDSQYSVDSLNRTAENEEGDVPNSLPSIASVVNSVSIMEEDSQMSEPTEGPSSGFAESTMVPVKWPKDRIVMQRLDQLCDCVRKGIWPVRPKPEPLLPNQLGVTSPTVLSNMVDMDSAMMHPGLLLDGSKDDSSKAFQVQRIDGLKLSLKKHRRKRKKDGLLLKEGDTDSIGSDSDLAAPTHRKPRKMKKETNFWSEHALSMDLALPHQQPHIGDPSLGEKTPKKRRRKKEDKGDKPDKPNAGKRKGRKPKSSKLGSAGSQDSGGTPVGEYLGHDWTGGNLSSSVMAASANPGMADRFGDMANPLTEQRIKSEKSEKHDNRLEGPQGPLPSLFTRPTGDPQRSNPTTPTGAATPTSHQFLAGVYNDSSFSNVTKQEDQDSSDSSSHSSPSPQPNSFSSPGYPYGSGYQHAFGHYGGVPYAPPYGMGVAPPNPVNAKSPVASSPSAMSSHFMFGNAYSSIYSAQGGYGGYPYLGLNNGGSAAAIGLKETNIKGDECTSPEAHNKPFSTTSEGTAKPQSKSPKTLLT*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-