Gene detail

Detailed information of alvinactis_v1_g24603 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24603	IMPORTIN BETA	chr_13	6542105	6559435	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24603

ATGGCGGAGTTGGAGCAAATTTTACTGAAACTTCTCTTGCCGGATAACGCTGTAATAAAACAGGCTACTGCAGAACTTCGCGAGGCTTTCAAGAATCCAGTCGTCGTTCAGTCGTTGATCGCAGTGTTGAGCTCCTCGCAGAATCCACAGGTTCGTCAATATGCAGCTGTTCTCCTCAGAAGGCGAGTGGTCAAACAGTGGACCAAACTCACTCCTGAAATGCACCAAATGCTCAAGCAATCATTGTTGCAAGTTTTAATCCAGGAACCAATTTCACTAGTACGGCATGCTGCAGGTCAGGTTGTCAGTGTTATCGCTAAGTTTGAAGTTCCTGCTGGTCAGTGGCCTGAGCTTTTACAGTTCTTACAAGAATATATCAGAAGTAAACAGCCTGAGCAAAGAGAGATGGGGATGTTTGTACTAAGCTCTGTAACAGAGTCTGTAGGAgaacagCTTAAACCTCAATTCCCTGCTTTACTTGCACTGTTCTCCTCAACACTTGAAGATCAAGAGAGCAAAATGGTTCCTTTTTATACTATAAAGGCTTTGATGTCAATGATAGAAAATATTGGAACAGATGAAGTGGCTGCAATGAGACTTCTTATACCTAAAATAATGAATGTCATTGAAGCACTGCTTGCTATTGATGAGGACAAAGCTTGTGAAGCCATGGAGATCTTTGATGAGTTGGTGGAGTCTGAAGTCAGTATCGTCACTCCTCATCTTGTCTCTCTGATGGAGTTCTGCTTAAAGTTGGCCATGAACACCAATTATGCTCATAGTTCACGTACAAAGGCACTCTATTTCGTTAGCTGGTTAGCACGCATTAAACCAAAGGCTTTGATAAAGAATAAACTGGTTGTTCCAACGTTGGCGGTAGTATTTCCTATAATGGCTGCTGCACCCAGTGAAGAGGAGATTGAAGACCTAGAGGATGATGAGTTAGAAGATGGAGCTGAAGCAAGTCGACCATGTGCAGTAGCTTCACAGGTTCTTGACAACCTTGCACTTCATCTTCCCCCAGAAACACTGATCCCTCCATTGATGCAGTTTATTGATCCAGCACTTGGTAGCACTAACCCATATGAAAGAAAAGCAGCACTCATAGCATTAGCAGTTTTAGCAGAAGGCTGTGCTGACTACATTAGAAACAGATATTTAGAAGCAGCTCTTGGGACTGTTTGCCAAGGTCTTTCAGACGACCACCATGTTGTTCAGAATGCAGCGCTATTTGCTCTTGGTCAGTTTTCTGAACATCTCCAGCCTGATATTAGCTCATACAGTGATAAAATCCTGCCTCTCCTGTTTGAACATCTTGGACAAAGTACAGTCATCAATAATGACCAGTGTCCTAGTGCAACACGTACTTACTATGCATTGGAAACGTTCTGTGAAAACTTAGGTGAAGGCATTCTACCGTATCTCCCAACTCTACTTGATAAGTTATTAGTTGTGCTTTCATCGTCGCCGaatacacatctaAAGGAGCTAGCAATGAGTGGCATTGGTGCTGCAGCGAATGCAGCAAAGGAAAACATATTCCCTTATTTTCCTCGAATTGTAGAACTAATTAAGATACATTTGACTAATCCTGGAACATTGGAAGGAAATGTGCTTCAAGTACAAGCCATTGATACTCTAGGTGTGTTAGCAAGAACTGTTGGTCCCCAGAACTTCCTTCCTCTTGCTGAGGAATGCATACGACTAGGACTGAATCTTCTTGCTCAAGACAAAGACCCAGACCTAAGACGATGCACgtatggttTGTTTGCCTCTGTGTCAACCATCTTAAGGACCAATATGTCTGCCTTTCTACAAGAAATAATGCAACACATGATGGATTCACTGCAGTCTGCCGAGGGAATTGTTACACACTACGCCAGTGAGAATGATCCATCTTTCTTGTTAGAAGATGAAGACTTAGACCAGGGAATTGAGGATGATGAAGATATTACAGGATATAGTGTTGAAAACTCCTACCTTGAAGAGAAAGAAGACACTTGCAATGCCTTAGGAGAGTTAGCAGAAAACACTGGAATAGAATACCTTACTaagtaa

Transcript

alvinactis_v1_g24603

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03810	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF13513	HEAT_EZ	HEAT-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494	Domain	Importin-beta, N-terminal domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040122	Family	Importin beta family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10527	IMPORTIN BETA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0061608	Molecular Function	nuclear import signal receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-