Gene detail

Detailed information of alvinactis_v1_g24402 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24402	T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG	chr_13	3897074	3948966	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24402

ATGGCGGACGAATCGGGGGATGTAGAGCTTGAAATCTTAGCCTTGGTTAAGAAAGCAATTCGCCATGAATTGGACTTGGATTTTGTCAAGAAAGTGAAAATTGAGTACAAAGGGGAGAAGGTCGAAACCCGAATCTTGGCTTTGTCAGCATATCGTGTTTATATCGTAAGCAGCAATAAAACAGCAGGAAAGGTCGAATCCAGTTTTCATATTCTAGGAGTACAGCAAATTGAAAGTCTCAAGCCACTTTTGGTCAATATAACTGCAGCAGATAAAATATACGCCATTAAAGTAGCTCAACCCAAAGACAGTATAGAGATTATTGCACATATACAGGCTGCGTTGAAGTCTTCTTTTCCAACTGGGAACCCAGATCGTTTCAGACTGACACTTGGCCCCACAGAGGAGGCAGAAGCAAGACAGGAGAAGATCAACAATCTTGTTAACACCTTGATTGATACTGAGGCTGATACTGAAGTTGGACCATGTGGTGGTTTTTCCAAGGTTTACGCTTGCATGTGTAATTATTACGGGAGTCGCTATCTGGAAGAAGTTGCATGGGATGTTGATACTATTTACTTGACGCACAACACCAAGGAATTCAACCTGCAAGATTTTGACCATTTAGATCAAAAGGACTTAATACCAATTATAGCAGTCTTGGAATACAACTCATGGTTTAACAAGCTGATCTGCAAATCATTTAAACTGAGTTCTGATGCCTGTGATGTCATTTATAAAGTTGTCAAGAAATCCACCACCCTTGAAGAACTGGTTCTTGATGGAGTTAGTCTAGGAAGGGATTTCTTTCATAAAGTAGGACTGGCTTTAACATCCAATCCCAAGACAGCCCTTCACAGTTTTGACTTCTCTAATAATGCCATGGAAGACAGAGGTCTTAGCCACTTGACTGGGTCATTCAACAAACCACAAGGATTAGTGTCACTCTCATTGGTTGACAATGGCCTGACAGTGAAAGGTATACTAAGTCTGGTTAGCTCATTAAAGAACAGTAAATATGTACAAAGCTCATTGAAAAGGTTGAATCTTTCAAAGAATCCACTGAAAGCTGAGGGAGTAACTACATTGTCAGACTTCTTAGCTCAACCTAATTCTCTGACACACTTGGACCTGTCATACACCGATTGTGCACTGGATTTGTTGTTTGCGGCATTGATGAGAGGATGTGTACAAAACTTGATGCATCTTAACCTGGCTGGAAACAACTTCACTACAAAGAAAAAGGAAATCACTGTACAACAGTCATTTCAACAGGATGACGCAGAGCAACAATGTATAAAGTTTTTCAGTTTGGCACAGGACTTGAAGTTTGTGGACTTGTCAAACTGTAAGCTTCCTCCAGAAGCAGTGAGAGCTTTATTAAAAGGCTTCTCTGATAATGACAACCTAAAAGATGTAGAGCTCGACATCAGTAAAAACGAGCTCAAAAGTCCAGGTGCAAAAGTTCTTGCAGATTCCATCCCGGAAATAAAAAATATCAAGAAATTGAATATCAGTGATAATGGTTTTGAAGGTGATTTTATAAATATACTCGAGAGCTTAGGACATAATGAGTCCATCCAAGAACTGTGCATTGGACAAAACTTCAAAGCCAGAACTTCAAATGCTGCAGTGGAAGCTTTGGTGCAGCTTGTATCAGAGGAAAACTCGCATATACAGTCACTATCATTAGCTGATTCCAAACTTAAGCAGGACGTGATACCATTACTGGATTGCCTGGGGACTAACGAATCGCTTATCAAACTGGATATCAGTGGTAACAGTATAGGAGATGACGGAGCACGTATCCTCGCTAAAGCCTTGCAACTCAATTCCAAATTAAGGACATTAGTTGTGGACAAGAATAACATCTCCCATCGAGGATTTAGTGACATTGCTGCAGCCCTTGAGAGTAACTACACTCTATACTCGATCCCATCACCATTATATGACGCTGCACAGTGTCTCAAGTCTCACGGTTCACACTGTGAACAACACTTGAGGAAGATCGAAGCGTTTCTACTCAGAAACCAGTCACCTCACAAAAAGGTAGCAGAGCAAGCCTACCGACTACAGCAAGGACTATTGATTGCATCCACTCAGCAACAGGCTGTCGATCGCCTGATTGTCCATTTACAAGACAATTTATTTGCACTGAGGCACTCCAAAGAAGAAAACGTTCAAAAAGAAGTATCGGTTGCTAAGCAGTATATCCAGGATGCTGACAAACTCAAGCAACTCCTTCTGAAGTTTCATCTCTGCACGGATGACAGTGACATCGAAGCTGAATTTTCCAAGTTGTCAGAGAAATTCTACCAAACATCACAGGACAAAATAAAGGACAACCTTGATAAAATGTTGGAGTGTGCACGAGACGTTTGTCCTTACATCACAAGTAAAGAGGATGTTGAAGAAAACATGGCATTGATAACTGTTGGTAACCAAAGACTCAGCCAAACATTCGTTGAAGAAGTTATCTTGTCTCAGGCCGCTGCGACCATCCTTAATAGAATCAGTGAGAATAAGTTGTCTGCAGCGTCTGTCATGGCTGATACATTGATGGAACTGGTGATACGACATATGGAGACAAGTAACGTACATTTGGAACTGTTGCTCAAGGAACATCGTCAGAAACAAGCCCAGGCCGAGTACCAAGACGGGGAACTGGATAACACTGATGACGTAGTTGTGGCTGCTAGAAAAGCCAAAAACCGAATCAGCTCAGCTCTACTCGTATCTGGCGAGAACTCCGAGGAAGTCCCCAGGAGCCACAGACGGCGGCCGACAATCAGCAAGCCAAGGAGAAGCTTTTCAGAGGAGAATATAGTGGTGGATATTGATTTGGACGATGTACAAAAGGACGAGGAAGATGGAGGGTTGAAAGAAGAGAAAAAATCTCCAATGGTCACTAAGAAGGCAAAGGCCCCTGCTACGCCGAAGATAACCTCAACTGAACTTGACTTCAGCGCTGTAGAGCATAAACATGTCGGACTAGACCACTTGGCAAAGAGTCGCCCCCGTCCTGCTCATGGTCGTCGTCTTCCAACTCGACCGTCCAATCGACCTCAAGTGACGAATGGCGTTGATAAATCCAACGATGAGGCTGACGTTAGCATCGATAGTTTCTGGGCCGCGCCCTCCGAGAATGAGCCTGTAAAAACACATACCAAGTCGTCACAGAAGGAAATCAAGGCACCTGCCAAGACTCCACCACGACCCGCACCCAAACCCGCACCGAAGCCAAGACCCGCGCCAAGGACTGATGAATCAAAGAAAGCTGGATGGATTCCCAGAGGTGGCATTAACCTTGGATTACCGGGATTCTTTAAGAAGAAAAGAGACCGTTCAGGGTCTGGTAACGAGGCCGATCAGTCTGCATTAAAATCATCAGAGAAAGATAAAAAGTCTCCGTCACCCAAATCCAAAGAAACAACCAAATCGGCAGCACCTCCTAAACCTGCCCCACCACGTGATCGACCAACGTCAGTTCTTCCACCTAAACCTGCCGTCAAACCACGTGACCGCTCAGGTTCCTCGCCTGGATTACGTTCACGTACTGGTTCTAGTAGTGCTGGTGAGGCGCTGAGTAAACCAGTGGAGATCAAAGAAGAAGAGACTGTCAAGGAAAAGCCTGCAACACGAGGCCCGCCTAAGTTTGGTATTGGTATTGGTGGCATGGCAGGCGGGGGACTGTTAGCGGAGATGAAGATGAGACAAGAGAGAGCTGGAAGCTCTGGTAGCAAGGTTCCACCTGAGACTGTACCAAAACCAGCAAGACGGCCATCTGCAGAAAGCCGGAACAAATCCGATACGGAATCTAAAAGCACTCGCAGACCATCCAATGAAGACATGGCACCTGTTACTCGTCCCAGGGTCTCCACGGGTGAAAGTGATCCAGACAAAATCAGTGAAGAGGGCCTGGTACGACCATCGTCTATAAAGAGACCGCGCACTTCATCTCAAACTCCACCAAAACCACAAATCAAACCGAGGGACAAAAAGGAAGACAAGGAACAAGAGGAAACGAAACAAGAAGAGAAAAAGAAACCCGAGAAACTAGTTGAAGCGAAAAAGGAAGAACCGCCGAAAGGCGCGGTCCTGAAGCTTGGAGAGGAGGCTGGGGAGAGTGTAGATGGAGTAGTTCACGAGAAACAAAACGAAACGGAAGAAAAAGGAGAAAAACTAAAACTTAAAGTGAAACCAGACGATACAGAATCAGACTTATGGGTCAAACGAGACATGCCCAGTCCCAAGCGCAGCCCTAAATCTCCCAAATCCCCAGCACTGATAAGTACAGAAACACAACACATCAAATCAGAATCGAAACCAATGTCACCTATCACACGTGCAGCAACGCTTCCCAAACCATGGTCTCCTAGTTCTACAACTACACGATCTCTTCCCAGAAAGTATAGTTTTGAGGGTGATAGAAAGGTGGAAAAGGACGAAGCCAAGGTAGAAACTAGGACAGAGAGGACGCTAAGTATTGACGAGGAAAAGGAATCAAAGAGTAATGAAAATAACGTGGAAGAGAAATCAAACTCTGAAGGTCTCCGGAAAAGTGTTTCGCCGTTTCGTTTGCCGCCCAGGAAAACCTCGTCAAAGGAATCAAAAGATGAGACTCCCACACTCGAAGATGAAGATAAAAAAGTTGACCAAAACAAAACTGAATCcacagatgacgtcacagatgacgtcgaagatgagtcaGCGGAAACTACACCAAAGAAAGACGAGGAGAAACCCGACTCACCAATGCAAGACAAATACGATGATCCACTAGGAGTCAACGCGTCTTTATTAAGTACAGATAGCATTAATAACGAGAGTCCTAAGAAAAAAGAACGACCTATTTCCGCCTATTTTCCTTTAGAGAATGAAATGCAAACTACGATAGCAAGACAGCTTGGTATTTTAGTATTTTCTAGCTTATTTTTAACCCAGGTTTCTTCGTCTTTTCACGATGTAACGGGGAAAGTCGGCGTGGCGTCTATCGATGGCATTCTAGCTGCGTTCGGTGATTTCAATGGCGACAAATCAACTGATCTTTTTATTATATCAAAACAAGGTAAACAGTTGGAGATATGGACATGGGACGAAGGAAAACTAAAATTCAGCAATTTTAGATCAATGGATTTTCCAGACGGGTATATAGTGAATATAGCACCAGGGGACTTTGACGGCGATGGATGTATGGATCTTGCTATCACAACGCAGACAAGTCCACTGAATGTTTCAAATTTGCAACCTAAGAAAGTGTACATTATATGGGGCAATCAAGACAAATTAACAAACATTAAAGAATCATTTGTTATCAATGAAGACTTGAAGGACCAACCAACCATTCTGGATGTGAATGGTGATCTGCTACCTGATCTATTTGGTACAATCTATAGTAAAGATAATGCCAGCCTTGAACAGAGAACATACTGGATTTCTATAGGGAAAAACAGAAGTTTTGTATCCCAGCCACAAACAACCAATGTTACAACCAAAGATGGAAAAACACATCAAGTGACCCTTGACCCTGTGCGGATCCCTCACTCTAATGGATTCTTAGACCTTACTGGTGATATGACTGCAGATTTATTTGTAACTTCAAAGAAGCAATCTGGAGAATATAACTTTGAAATCTGGAAAAATCAGGATGGAGTATTAGAACATGTCAGTCCAGATATCTCTCTTCATGGTTTACCCAACAATCCTGCTCATGTAGGACAATCAGCATTTGCTGACTTTGATGGTGATGGTAAGATAGATCACCTTCTGCCTGTATGTTTATCCAAAAACTGTGACCAGAGTGCAATCTATCTATACTCTAACAATAAGTGGTCAAGGATCATGTCCAATCATCATAAAACATGGCAGTTAATACCTCCGTCCAGTAATTACAGTATTCCTAATGTTCCTCTTATGACTCTCAGAGTTGGTGATTACAACATGGATGGATATCCTGATGGTCTCATTATTTTACATGTTTTTACTTCAAGTGGAACCACACTCAATAGAATCCCTGTTCTACTGGAGAATGTCCCTTGTCATGGTAGTGATAATTGTGGGAATGGAAGGACATTTGAAATGCAGTGGAAGTCAATGACATCTTTAGAGGGAGCTGTTGTGGCTACATTCTTTGACATGTTTGAAAATGGAATCACAGATTTCATGATAGTCACAGAATCCAAGGGCAAATTTCATCTTCATGCTATACGTAATAATCTTTATGTAGATGCATCGTTTGTCAAAGTGCTTGTCCTGGGTGGAGTAACGCTCGAGTCATGTACTGGTGATCATCTGCCATATGGAGTAAACCAAGCAGGTCCCTATGTTAGTTATACCATCACAGATAAAGATGGGAACTTAAAGAGCGGCGCTGCGGCTCAGCTCTCCCAGTCAGGTTACTTTGCTCTTCAGTCTCCATACATCGTGTTTGGGTTGGGACGTACACCAAACTTTGTTGATAAACTCAGTATTGGAATGCCGCGCGCAAAGGGTTCACCTCTACGCAGCCACACTTGGCCGTCTATTATTCCCAACTCACAAATGATTATTATCCCGTACCCTCCTGATGAACCATACAAGTGGAAGTCCAAGCTGCTAGTTACACCGAGTAAACTTGTCTTACTAACATCACTTTGCTTGCTGGGTATTTGTGTTCTTCTTGCAATAGTTATTGTTGCTCTTCATCTCATTGAGAAGAGAGCCGACCAGAAAGAGAAAAGAGAAGATGCACACAAGTTCCACTTTGATGCCATGTGA

Transcript

alvinactis_v1_g24402

Protein

alvinactis_v1_g24402

MADESGDVELEILALVKKAIRHELDLDFVKKVKIEYKGEKVETRILALSAYRVYIVSSNKTAGKVESSFHILGVQQIESLKPLLVNITAADKIYAIKVAQPKDSIEIIAHIQAALKSSFPTGNPDRFRLTLGPTEEAEARQEKINNLVNTLIDTEADTEVGPCGGFSKVYACMCNYYGSRYLEEVAWDVDTIYLTHNTKEFNLQDFDHLDQKDLIPIIAVLEYNSWFNKLICKSFKLSSDACDVIYKVVKKSTTLEELVLDGVSLGRDFFHKVGLALTSNPKTALHSFDFSNNAMEDRGLSHLTGSFNKPQGLVSLSLVDNGLTVKGILSLVSSLKNSKYVQSSLKRLNLSKNPLKAEGVTTLSDFLAQPNSLTHLDLSYTDCALDLLFAALMRGCVQNLMHLNLAGNNFTTKKKEITVQQSFQQDDAEQQCIKFFSLAQDLKFVDLSNCKLPPEAVRALLKGFSDNDNLKDVELDISKNELKSPGAKVLADSIPEIKNIKKLNISDNGFEGDFINILESLGHNESIQELCIGQNFKARTSNAAVEALVQLVSEENSHIQSLSLADSKLKQDVIPLLDCLGTNESLIKLDISGNSIGDDGARILAKALQLNSKLRTLVVDKNNISHRGFSDIAAALESNYTLYSIPSPLYDAAQCLKSHGSHCEQHLRKIEAFLLRNQSPHKKVAEQAYRLQQGLLIASTQQQAVDRLIVHLQDNLFALRHSKEENVQKEVSVAKQYIQDADKLKQLLLKFHLCTDDSDIEAEFSKLSEKFYQTSQDKIKDNLDKMLECARDVCPYITSKEDVEENMALITVGNQRLSQTFVEEVILSQAAATILNRISENKLSAASVMADTLMELVIRHMETSNVHLELLLKEHRQKQAQAEYQDGELDNTDDVVVAARKAKNRISSALLVSGENSEEVPRSHRRRPTISKPRRSFSEENIVVDIDLDDVQKDEEDGGLKEEKKSPMVTKKAKAPATPKITSTELDFSAVEHKHVGLDHLAKSRPRPAHGRRLPTRPSNRPQVTNGVDKSNDEADVSIDSFWAAPSENEPVKTHTKSSQKEIKAPAKTPPRPAPKPAPKPRPAPRTDESKKAGWIPRGGINLGLPGFFKKKRDRSGSGNEADQSALKSSEKDKKSPSPKSKETTKSAAPPKPAPPRDRPTSVLPPKPAVKPRDRSGSSPGLRSRTGSSSAGEALSKPVEIKEEETVKEKPATRGPPKFGIGIGGMAGGGLLAEMKMRQERAGSSGSKVPPETVPKPARRPSAESRNKSDTESKSTRRPSNEDMAPVTRPRVSTGESDPDKISEEGLVRPSSIKRPRTSSQTPPKPQIKPRDKKEDKEQEETKQEEKKKPEKLVEAKKEEPPKGAVLKLGEEAGESVDGVVHEKQNETEEKGEKLKLKVKPDDTESDLWVKRDMPSPKRSPKSPKSPALISTETQHIKSESKPMSPITRAATLPKPWSPSSTTTRSLPRKYSFEGDRKVEKDEAKVETRTERTLSIDEEKESKSNENNVEEKSNSEGLRKSVSPFRLPPRKTSSKESKDETPTLEDEDKKVDQNKTESTDDVTDDVEDESAETTPKKDEEKPDSPMQDKYDDPLGVNASLLSTDSINNESPKKKERPISAYFPLENEMQTTIARQLGILVFSSLFLTQVSSSFHDVTGKVGVASIDGILAAFGDFNGDKSTDLFIISKQGKQLEIWTWDEGKLKFSNFRSMDFPDGYIVNIAPGDFDGDGCMDLAITTQTSPLNVSNLQPKKVYIIWGNQDKLTNIKESFVINEDLKDQPTILDVNGDLLPDLFGTIYSKDNASLEQRTYWISIGKNRSFVSQPQTTNVTTKDGKTHQVTLDPVRIPHSNGFLDLTGDMTADLFVTSKKQSGEYNFEIWKNQDGVLEHVSPDISLHGLPNNPAHVGQSAFADFDGDGKIDHLLPVCLSKNCDQSAIYLYSNNKWSRIMSNHHKTWQLIPPSSNYSIPNVPLMTLRVGDYNMDGYPDGLIILHVFTSSGTTLNRIPVLLENVPCHGSDNCGNGRTFEMQWKSMTSLEGAVVATFFDMFENGITDFMIVTESKGKFHLHAIRNNLYVDASFVKVLVLGGVTLESCTGDHLPYGVNQAGPYVSYTITDKDGNLKSGAAAQLSQSGYFALQSPYIVFGLGRTPNFVDKLSIGMPRAKGSPLRSHTWPSIIPNSQMIIIPYPPDEPYKWKSKLLVTPSKLVLLTSLCLLGICVLLAIVIVALHLIEKRADQKEKREDAHKFHFDAM*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF13517	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan
PF16000	CARMIL_C	CARMIL C-terminus	Family	Interproscan
PF17888	Carm_PH	Carmil pleckstrin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR024881	Family	T-cell immunomodulatory protein	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR031943	Domain	CARMIL, C-terminal domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR041245	Domain	CARMIL, pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13412	T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-