Gene detail

Detailed information of alvinactis_v1_g24336 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24336	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	chr_13	2821857	2852785	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24336

atgaaagaacagaagaaagatTGCAACAGCAAAGTTCTTACTGGTGATCGTGATGATCAAGAGAACTGGATAAAAAAGATTGGAGCAAGAGCACATCTCAGGGCAATTGGATACAAGGATGCAGATTTTTCCAAGCCTATTATCACAGTTGCTTGCTCCTATAGCAACATTTTGCCTTGTAATTTTCACTTCAGAGAGCTTGCAGATCATGTTGTTCAAGTCATTGAATCCCTTGGAGGCAAAGCTTGTCTAAGCTACACCCCAGTCATCAGTGATGCTGAAACAATGGGAACAGCTGGTATGAAGTACTCTTTGATATCACGTGACTGGATTGCAGATTGCATTGAGATCATGCACTGTGGTTACACAGGGGATGCGATCATTAGCTTGGCTGGTTGTGATAAGACTATACCTGGTGTAATTATGCCACTGGCTCGACTTAATGCGACAGGTGTTGTAGTTTATGGTGGTACAATGCCTCCAGGTTGTGGTAAAAAAAAATACCATAAAAACCTGAGTGCTGGAAGCCCATTTGAGGCCCAGGGCGAATACAGTAAGGGGACTATCGATATGGAAGACTTGATAGATATTGAATGCCATTCTATTCCAAGGGCTGGAACATGTGGGGGAATGTATACTGCTAATACCATGTCGTCTGTAGCTGAAGCCTTGGGGTTAACTCTACCAGGAAGTGCGTCAGGTTTAGCAGTGGACGAGAATAACAagGTCACACCTCAAAAGAAGAAAGAGTGCGAAGAAGCAATTAAAGCTTTATTTGCTTTGATGGAATCTGGACGTACGACGAGGGACATTATAAGTAGAAAGTCGTTTGAAAATGCTATCACAGTGATGTATGCACTGGGTGGATCAACCAATGGTGTGCTTCATCTACTGGCGCTTGCTCATGAAGCTGACGTCGAACTTGAAATCGAAGATTTTAATAAAATAGGAGGAAGAGTTCCTATTCTTGCTAACGTGAAACCTCACGGCAAGTACCAAATGGCTGATATTGACAAAGTTGGAGGACTTCCGATACTTCTGAAGGAACTTTTAAATGGCGGGTTTTTACATGGAGATCAGCTGACAGTAAACGGCAAGACAATAGCTCAAAACTTGACAAACACACCAACCCTGGACAGCATGACGTCACAGGATGTGATTTCTCCACTCTCTGCACCAGTAGCGCCAGCAGGCCGCCATATTCTTATTCTCAAGggtaacttggcacctgagagTGCTGTGCTCAAACTTAGCGGCAAAGATGTTACCTTTCGTGGCCCGGCTGTGGTGTTTGACGGCGAGCAGGGAGCCTACAAAGCAGTCATGAGTGGGAAGATTAAGGCTGGTGACGTATTGGTTATACGATATGAAGGACCAAGCGGAAGTCCAGGAATGCCAGAGATGCTATCACCAGGAGCAGTGCTTGTAGGAGCAGGACTAGGAACTAGCGTTGCCTTGGTAACCGATGGACGATTCAGCGGGGCTTCCCATGGGATTATGATTGGTCACGTATCACCAGAAGCCCAGAAAGGAGGACCAATCGCATTGGTTGAGAATGGAGACATGATTGCCGTTGACCCTACTCAAGGAACCCTTAATTTGGATGTTAAAGAAGATGATCTGCATATCTACTTTCAAAGTAGGAGAAAATCAGATGGCGGAGACATAGAGAGCATTGTCTATTATCCTGTCACTCGAAGTGCTAAGATCACCTTCACAGACGAACAAGTTGTTAAAAGAGTTGTATGCAAGCATCATCACATCAAAGGTTCCAGGTTAGCTGTTCAAGTGGCAAGTGATCTGTCTGGAGACACTGGGTCCACTTCTATCCTGGTCAGTGGTCTTTCAAGCAGAACTACAAAAGATGCCTTACAAAATTATTTTGAGAATTCTCGACGGTCAAGTGGAGGTGACGTGAAAGAAGTCAAAGTCGATGGGGATAAAGCTATTGTTACATTTGAATTGCCAGAAATTGCTAAGAAAGTGTTAGAATGGGGTAAGCATACTCTAGACGATCATCCCCTGACCGTGTCCAGGATGCAGCAAGATCAACCCAAGAAACCCACGCCCACATCAGAGCATGATTCAGCCACTAATGAAGAACGGTCACGTGTGGTCAGGATAACAGGCATTTCCCACAACACAACCAAAGATGCCTTGCTTAACTTCTTTGAGAACAAACGACGATCTGGAGGAGGAGAGATAGAAGACATTCAATATATTCAAGATGAAAGCTTAGCTGATATCACTTTTTGTTCTGCTGAAGATGCTGAACATGTGTCTCAAAAAGAGAGTCTGGTACTTGATGATGCTAAAATCGGTCTCACACTCAAGGAAATTCCTAAAGTGCTACCAAAAGACCTGTATAAACTGCATGTAATGGATATATCCGACACGACTACAAAGGATGGGCTCACATCATTCATGGAAGTGGCCAGTGGCGAAGAAATCCTGAACATGATCTTTGGGAGTAATTCCAATGCGATGGTTATGTTTAAAGAGCCACCAGACATCGAAAAAGTCAAACGAAGGTGCAGCACCAGAGCACTAGATGGTAGCCATGTAAAGATTGAGACAGTTAGCATTTGTGACTGTGTTGAGGTGTGTGGATTGGGACCAAGTACAACACGTGACACTATATTTTACTACTTTGAAAACGCAAGAAAATCGGGTGGTGGAGATGTAAAAAAAGTGGAGTATGTTGATGAGGAGACAAAAGCGCTAGTGTTCTTCGAGGAATTCTCAGTTGTAGATAGTGTGGTGGCCCGTAAACATGTGATAAACGATGCGACACTCAAGGTTGTTCCTCACTATTCATTCCTTGGTGAAACATTAGCAAACCCTCGAGGCAGGAAGAAGGAAAAACAACTTAAAGTAGATCCACAGACGATGGTTTTTATCGATAAATTCTTTCACCAGGAATTCCAGGTTCTTTTACAGGAATACCAAATGAAGTGCACTTGTCAGCAAGGATCAGGAGACGTTGAGCTTTGTTCCATCGACATCAAGATAGAAAAAACTAAATGGGAGGATCACTGTACTGCTATTGAGACGTACATCAATCAGATTGTTACACGTACAGCAGTGGTGTCTCAAGCTGCCTGGAACGAGATGATTGAGCAGGCAAAACAGCAATTTTTGTCAGTCAAAGACAGACTTGATGTTGTATGCAAAGAGAAAGAACGTCTTATCATCGTCCGAGGAAAGGAACAAGATGTTGACTTGTTAGCAGAGCAGCTGGATGATTTAAGTAAAGAAATTGACAAGAAGATTGAGTATGAGAAAGCTAAAATCACAAAAGCAATTTCTCTCACTAAGCCTCAGTTAGACTTACTGAGTTCCATGGGGTTTGTTGAAAACCTTAAAGTACAATTCAAAGATCTTGAAGCAACGATGTTGAAAAAGGAGCTGTCGATTCACTTCAGAGGACCTGATCAGGTGGTAAGAGAAGGCAATATTGCTGTCTGGCAAACACTTTCTACAATGAAAGACCACGAAATGGAGCTTCCTAAATCCATTGTGAGCATCTTTGCCTCTAACGATGGAAATATGTTTCTTTCAAAAGAGTTAAAAAATAACCAGATTGATGCTGTCATCAGTTCTGACGCCAATGATGAAACAAAGCTAATAGTTACAGCAGTAGATCGCAGAGATGTAAACAAGGCGATGGATCTAATCAAGAAAGTGACAGCAGAAGACAGTGTTTCTCTAGACCCTGACCAAAAAAGGTTGATCATGTCTGAAAGATGGATGCAACTGATAGATAACTTTAAAAAGTCCATGGTGCTAAAGGTGACCACAGAACTAGCGTCAAGTACGGTGTGGATTGCTGGCGTCAAAGAAGAAGTTGTTAAGGCCAAGTCACAAATTGATGCGTTTTTTGAAGAAAATACAATCATCAGCGAAATGGTTGAAGCAGATACAGGATGCACCAAGTTTTTGTTTCGATTCAAAAAAGATGAAATCAAGAGAGTTGAAGAGACACTGAAGCACCAGTCAGTAAAGATTTGCTGTGACGAGAACGACGAAGATATATCAATTCGTGGAACAAAAGAAGGAACCGAGCAAGCCTGCAAGAACGTCCAGAAACTAATCGATCAGATCAAACATCGAACTATTGACCTTGACAAACCAGGAATCAAGAGATTGTTTAATGAGAGCCAAGGAAAGAAGCTACTGTCCAATGTCGAAAACGATCATACATGTATCATTGAACGATGCACATTAACAGATGACAACAAGAGACGTTCTGCTGTGGGATTGAAACTAAATGAGAGCTTGTCAAAACGAATCTGTAGCTGCGTAACACCAGAGGGAAAGAACATCATTCTCTTCAAAGGAGACCTCACCGAGCACAAAGTTGATGTGATGGTGAATGCAGCCAACCAAAGGTTGCAACATATTGGTGGGGTGGCAAAAGCCATCTCACAGAAAGGGGGAAGAGAAATCCAAGCTGAATGTGACGAGCTTGTATTACGACATGGTGATGTTTTGGATGGAGAAGTGGTTGTTACAAGTCCAGGAAAGTTGCCTTGTAAACGCCTGGTCCATGCAGTTGGACCAACATGGCGCAGATCACCTTGGTCAACATATAAAGATGAAGAAACAAAAGAGGAACGTATCCTAGGACAGACTGTCTTTAATGCTTTAGATGAAGCAAAGGATTTTACAAGCATTGCACTCCCTGCTATAAGCGCTGGCGTCTTTGGTTTCCCTGCTGATGTCTGTGCAAAGACCATATTAGAGAGTGTCCTGGCATATTCTGAAGAAAATGCTCGCAGCAATCTATCTGAGATTCACATTGTTGATATGAATGATGATGTTATAAAAGCTTTTACTCACGAAATGAAGTCAAGATTCAGCAAAGATAAATCATTTTCCGATAGTGCAGCACCAGTGGCTAAAATCGAGTCTGGAAAAGGAAGTAAGTTTAGAGGTAGAAGAAAGAAAGAAGAGCTGAATAACCCAAGGGGACGGTTTGACGAAGATGACCTAACAAACACACTCATCGGTTCAGTTCGTGTGGAATTAGTACCTGGAGATATAACGAAAGAAGCAACAGAAGCCATAGTAACAGTGTCGAACACTTCCCTTGATTTATCTCTCGGTGGTGGAGTAGGAGCGGCCATTGCAAGGAAGGGAGGACGTTCCATACAAATGGAATGCAACAAATTGGGCAAGCAGGAACCAGGGTCAGTCGTTTGCACGTCAGCCGGCACACTTCCATCTCAAAAAGTGTTCCATCTTGTTTCTGCATCTTATAATCCTCGCGACATAACCTACGTTATTTCGAAATGTTTCTCGATGGCAGAATCAAAGGGGATCAGTTCCATTGCTGTTCCTGCAGTTGGAACTGGAAATGCAAGCATAGCACCCAAGGAAGCAGCAAAAGCTTTGTTAAATGCTGTTGGGAAGTTTTGCAAGACAACACCGTCGTCTGTAAAACTTATCCGCATTGTTGTCTTCCAAGAACACATGCTCAAAGATTTCTATGATGCCATTGAGGATTTAGCCAAGGCAGAATCCACCTCAGGTGGCTTTTGGTCATGGTTAAAAGGGTTCATATTTGGAACTGGTGGAGCGAACACTAAAGGCCATGGTCCTTCGACTACAGATCGAGGATATATCGAAATGGCTGGTAATAGTGGCACTGCATTTAAACCAGATGCTAGGATGTGGCTCAAGGTTTTCGCTTCCAGCGATAAACAATTGTCGAAAGCAGACACTGCCATCAAAGAGCTGATAAGAGAACAATGCAAAAAGAAAACGATTGACAACACTGACATTGAGGGACTTTCACATACCCAAGAAAAGCGCATTCTGCGGCTTCAAGAAAAATACTTTACCGAGATAGAGGTTCAGAAGCGCCTTACCCGAATCATTATCTCTGGTGTCACTAATGACGTTTCGGAAACTGCATTTGCCATCTATGAAATCCTGAATGAAAAGGCCGAAGAGGAGCACAAACGAAAATATGCAGAGCTTGTTTCCAAAAATGTACATTGGTTTTATATTGATGGTGACGAAGAGGCTTACGATGATGAAACCAATGCCAAGATAGAACAAGCATACATGAATAAACAAACTTCAATAAACATCACCTTACTCGATGAGCTCAACAAAGAACAACGTTACAAGATCGATTTTGCTTCCATGACTGAAACCAATGTGCATGCTCATAAAACAACGGGTGTTGTGAGGAAAGAGCACGGCAAGGGTATTCCGTTACCAAGCCACTGGGAGCCTCAACCAAGAAATGCTGATGGTAAAGAAAAAGTCCTTCATCTTGTACCACTGGACCCCGTCAAACACCAGCAAGAATACAATAGCGTTAAGAACGCGATAACAAAGACGTCACCTATCAACATCGTGAATATCGAACGAATACAAAATCCTGAAGTTTACCAGGCGTATATGGTGAAAAAGCAAAAAATGGATGAAAAGAATGGTAGCAAAGAAAAGAAGCTGTTTCATGGCACACCCGTAGACATCTGTAACCAAATTAACCACCATGGGTTCAACAGAAGTTATTGTGGAAAAAATGCGGTCGTGTTTGGAAAAGGTGTTTACTTTGCTCGCGATGCCTCGTATTCGATGAGACCTACCTATTCTCCTCCTGACCCCACTGGTAATCGGTGTATGTATCTGGCAAGTGTGTTGGTTGGAGAGTACACACTAGGAAACTCCAGCATGATTACACCACCGCCAAAGGACCCAAACAATCCTATACTAACCTACGACACGACTGTCGACGACGTGAATAATCCGTCTGTATTTGTTGCATTTCATGATAATCAAAATTATCctgagtatttaatcacttttaaatag

Transcript

alvinactis_v1_g24336

Protein

alvinactis_v1_g24336

MKEQKKDCNSKVLTGDRDDQENWIKKIGARAHLRAIGYKDADFSKPIITVACSYSNILPCNFHFRELADHVVQVIESLGGKACLSYTPVISDAETMGTAGMKYSLISRDWIADCIEIMHCGYTGDAIISLAGCDKTIPGVIMPLARLNATGVVVYGGTMPPGCGKKKYHKNLSAGSPFEAQGEYSKGTIDMEDLIDIECHSIPRAGTCGGMYTANTMSSVAEALGLTLPGSASGLAVDENNKVTPQKKKECEEAIKALFALMESGRTTRDIISRKSFENAITVMYALGGSTNGVLHLLALAHEADVELEIEDFNKIGGRVPILANVKPHGKYQMADIDKVGGLPILLKELLNGGFLHGDQLTVNGKTIAQNLTNTPTLDSMTSQDVISPLSAPVAPAGRHILILKGNLAPESAVLKLSGKDVTFRGPAVVFDGEQGAYKAVMSGKIKAGDVLVIRYEGPSGSPGMPEMLSPGAVLVGAGLGTSVALVTDGRFSGASHGIMIGHVSPEAQKGGPIALVENGDMIAVDPTQGTLNLDVKEDDLHIYFQSRRKSDGGDIESIVYYPVTRSAKITFTDEQVVKRVVCKHHHIKGSRLAVQVASDLSGDTGSTSILVSGLSSRTTKDALQNYFENSRRSSGGDVKEVKVDGDKAIVTFELPEIAKKVLEWGKHTLDDHPLTVSRMQQDQPKKPTPTSEHDSATNEERSRVVRITGISHNTTKDALLNFFENKRRSGGGEIEDIQYIQDESLADITFCSAEDAEHVSQKESLVLDDAKIGLTLKEIPKVLPKDLYKLHVMDISDTTTKDGLTSFMEVASGEEILNMIFGSNSNAMVMFKEPPDIEKVKRRCSTRALDGSHVKIETVSICDCVEVCGLGPSTTRDTIFYYFENARKSGGGDVKKVEYVDEETKALVFFEEFSVVDSVVARKHVINDATLKVVPHYSFLGETLANPRGRKKEKQLKVDPQTMVFIDKFFHQEFQVLLQEYQMKCTCQQGSGDVELCSIDIKIEKTKWEDHCTAIETYINQIVTRTAVVSQAAWNEMIEQAKQQFLSVKDRLDVVCKEKERLIIVRGKEQDVDLLAEQLDDLSKEIDKKIEYEKAKITKAISLTKPQLDLLSSMGFVENLKVQFKDLEATMLKKELSIHFRGPDQVVREGNIAVWQTLSTMKDHEMELPKSIVSIFASNDGNMFLSKELKNNQIDAVISSDANDETKLIVTAVDRRDVNKAMDLIKKVTAEDSVSLDPDQKRLIMSERWMQLIDNFKKSMVLKVTTELASSTVWIAGVKEEVVKAKSQIDAFFEENTIISEMVEADTGCTKFLFRFKKDEIKRVEETLKHQSVKICCDENDEDISIRGTKEGTEQACKNVQKLIDQIKHRTIDLDKPGIKRLFNESQGKKLLSNVENDHTCIIERCTLTDDNKRRSAVGLKLNESLSKRICSCVTPEGKNIILFKGDLTEHKVDVMVNAANQRLQHIGGVAKAISQKGGREIQAECDELVLRHGDVLDGEVVVTSPGKLPCKRLVHAVGPTWRRSPWSTYKDEETKEERILGQTVFNALDEAKDFTSIALPAISAGVFGFPADVCAKTILESVLAYSEENARSNLSEIHIVDMNDDVIKAFTHEMKSRFSKDKSFSDSAAPVAKIESGKGSKFRGRRKKEELNNPRGRFDEDDLTNTLIGSVRVELVPGDITKEATEAIVTVSNTSLDLSLGGGVGAAIARKGGRSIQMECNKLGKQEPGSVVCTSAGTLPSQKVFHLVSASYNPRDITYVISKCFSMAESKGISSIAVPAVGTGNASIAPKEAAKALLNAVGKFCKTTPSSVKLIRIVVFQEHMLKDFYDAIEDLAKAESTSGGFWSWLKGFIFGTGGANTKGHGPSTTDRGYIEMAGNSGTAFKPDARMWLKVFASSDKQLSKADTAIKELIREQCKKKTIDNTDIEGLSHTQEKRILRLQEKYFTEIEVQKRLTRIIISGVTNDVSETAFAIYEILNEKAEEEHKRKYAELVSKNVHWFYIDGDEEAYDDETNAKIEQAYMNKQTSINITLLDELNKEQRYKIDFASMTETNVHAHKTTGVVRKEHGKGIPLPSHWEPQPRNADGKEKVLHLVPLDPVKHQQEYNSVKNAITKTSPINIVNIERIQNPEVYQAYMVKKQKMDEKNGSKEKKLFHGTPVDICNQINHHGFNRSYCGKNAVVFGKGVYFARDASYSMRPTYSPPDPTGNRCMYLASVLVGEYTLGNSSMITPPPKDPNNPILTYDTTVDDVNNPSVFVAFHDNQNYPEYLITFK*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00644	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan
PF00920	ILVD_EDD	Dehydratase family	Family	Interproscan
PF01661	Macro	Macro domain	Domain	Interproscan
PF02825	WWE	WWE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000581	Family	Dihydroxy-acid/6-phosphogluconate dehydratase	Interproscan
IPR002589	Domain	Macro domain	Interproscan
IPR004170	Domain	WWE domain	Interproscan
IPR012317	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR020558	Conserved_site	Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	Interproscan
IPR034464	Domain	PARP-10, RNA recognition motif 1 and 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR037197	Homologous_superfamily	WWE domain superfamily	Interproscan
IPR037237	Homologous_superfamily	IlvD/EDD, N-terminal domain	Interproscan
IPR042096	Homologous_superfamily	Dihydroxy-acid dehydratase, C-terminal	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR052056	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0016836	Molecular Function	hydro-lyase activity	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-