Gene detail

Detailed information of alvinactis_v1_g24273 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g24273	TYROSINE AMINOTRANSFERASE	chr_13	2161826	2174224	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g24273

ATGGCGGACGAAGCGACAACCAAAGAATTTACTTTTGATGAAATCAAACACCACAATAAAGCAGGAGGATGTTGGGTTGTTATCCATGATTGTGTATACGATGTTACTAAATTTCTCGATGAGCATCCAGGAGGAGAGGAAGTATTGTTAGAACAAGCAGGTGGAGATGCAACTGAAAGCTTTGAAGATGTTGGTCATTCAACTGATGCTAGAGTTTTAATGAAAGATTACTTAATAGGAGAGTTAATAGAGGAGGACAAACGAGATAATTTGCCAAGTAAAGAACCAAAATATGATAAAACCAAAGACAATAAGGAAGGATCATCATGGTTGGTAAATATCCTCATTCCAGCAGTACTCGTGGTTGTCATAGCAATAAGAATGACATCATCTATAGCCATGAAAAAGAAGAAGTGGCATATCCCATCATCCAAGACAGCCAAAGACACATTTAACCCTATCAGAGCCATTGTGGATACCATGAAGGTTCAGCCAAACCCTGACAAGAAGTTGATTGCACTATCCATTGGTGACCCGACTATATTTGGTAACTTGCAACCTCCTAAAGAAACAGTGGATGCCATTGTGAAGAGTGTTAGAGCAGGCACTAATAATGGTTATGCGCCTTCAACAGGTTATCTTAAAACCAAGGAGGCCATTGCCAAATTTTGTTCTGCACCAAATGCTGAAGTGGAAGCCAAGAATGTGGTTTTAGCAAGTGGATGTTCTAATGCATTACAGATGGCCATTGATGTGTTGCTCAACCCTGGTGATAACATACTCTTACCTTTACCAGGATTTTCTATTTACCAGACAATAAGTGTATCAAGAGGGTATGAAGTACGAACATATAACTTACTTCCAGAAAAATCCTGGGAAGTTGATATTGATCATCTAGAGTCACAGATAGATGAAAAGACAAGAGCAATAATGATCAACAATCCATCTAATCCTTGTGGGTCTGTATATACAAAGGAGCATTTGGAGGCAATCATTGAAGtggcaGAGAGACACATGGTGCCGATAATCTCAGATGAAGTCTATGCTGATGTGATTTTCCCAGGTAACACGTTCTACCCACTGGCAGCACTGTCCAACAATGTTCCAATATTAACCTGTGGAGCCATTTCTAAAAGATTTCTTGTACCAGGATGGAGGCTTGGATGGATCCTCATCCATGATAAACATGGAGCATTTGAAGACGAGGTGCGACCAGGTTTAACATCGCTGTCACAGCTGATCCTTGGTCCCAATACCATCATCCAGGCTGCTTTGCCAGAGATTTTTGCCAAAACACCTCACAATTTCTATGAAAACGCCATAAATGTAATGCAGAAAAATGCCATGATATTATATGAGGACTTGAGCAAGATACCTGAACTCAACCCAATCATGCCTCAAGGTGCCATGTACATGATGGTCGGTATTGATACATCAAGATTTGAAGACATTGAAAATGACATTGAATTTACAGAAAAACTAGTTGAAGAACAGTCTGTCTTCTGCTTGCCAGCACAGTGCTTCAGATACCCAAATTACTTCCGTCTAGTACTGACAACACCAGAGGAAATGACCAAGGAAGCATGTCTGAGGATTATTGAATTCTGTGCATCACACAGAAAAGTATCTAATGGAGTGACGATGAATGgtgtcagtgtcctagagatatctgtctggaggtgtctgtctggagagatgtctgtctggacaggtgtcagtgtcctagagatatctgtctggaggtgtctgtctggaggtatctgtctggacaggtgtcagtgtcctagtatatctgtctggaggtgtctgtctggagaggtgtctgtctggacaggtgtcagtgtcctagagagatatctgcctggagaggtgtctatcctagagagatatctgtctggagaggtgtctatcctagagagatatctgtctggaaaggtgtctgtcctagagagatatatgtctggagaggtgtctgtcctagagagataa

Transcript

alvinactis_v1_g24273

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan
PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001199	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR005957	Family	Tyrosine aminotransferase	Interproscan
IPR005958	Family	Tyrosine/nicotianamine aminotransferase	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR018506	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR036400	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45744	TYROSINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004838	Molecular Function	L-tyrosine-2-oxoglutarate transaminase activity	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0006559	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006572	Biological Process	tyrosine catabolic process	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0009072	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-