Detailed information of alvinactis_v1_g23346 in Alvinactis idsseensis sp. Nov. Gene info
Gene IDAnnotationChromosomeStartEndStrand
alvinactis_v1_g23346SRCR DOMAIN-CONTAINING PROTEINchr_121407644614090972-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00385ChromoChromo (CHRromatin Organisation MOdifier) domainDomainInterproscan
PF00530SRCRScavenger receptor cysteine-rich domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF03732Retrotrans_gagRetrotransposon gag protein FamilyInterproscan
PF09668Asp_proteaseAspartyl proteaseFamilyInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR000953DomainChromo/chromo shadow domainInterproscan
IPR001190DomainSRCR domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR001995DomainPeptidase A2A, retrovirus, catalyticInterproscan
IPR005162DomainRetrotransposon gag domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR017448DomainSRCR-like domainInterproscan
IPR019103DomainAspartic peptidase, DDI1-typeInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR023779Conserved_siteChromo domain, conserved siteInterproscan
IPR023780DomainChromo domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR036772Homologous_superfamilySRCR-like domain superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050686FamilySRCR-S1 Scavenger ReceptorInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR48071SRCR DOMAIN-CONTAINING PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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