Gene detail

Detailed information of alvinactis_v1_g23100 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g23100	DEUBIQUITINATING PROTEIN VCIP135	chr_12	9016017	9025067	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g23100

ATGTATGTTTCGGCATCGCAAGTGCAAGGAAGATTGTCTGTCGGAGAGATGTATTCATTTCCTGAACACAGTGTTGTGTGTACATACAATGCAGACAACGATGTTTTGGAAGTAACAAAATACAAGGGTGCAGATGTAACAGAATGCGTACTATGTAAGGGTTCCCTGAGGAACGTTAAGCCCGATGGTTCACTGATATATAGAAATGGTGATAGAACAACCACTCCAGTTAGTGGTATTGCTAGATGTTTGTGTGGGTACAAGCATTTCTGGGATGGCAAGGAGTACAATAATCAACCCGAAATCTTCCCAGTATCTCTTGATTGGGGAGGCACAGCCATCAAGGAGAACGTTTACTGGTTTCAGTATGAAACCGATCCGTCTTTGAATTCCAATGTTTATGCCGTTGCCCAGAAACTGGTCCAAAAATATTATCCTGGAGAGTTTGGCAGTGAGAGACTGGTGCAGAAAGTGGTAGACACCATACTTAGACAGACGGCAAAGAAAGAGGGCGAAAATAAAGGTGCTCATCCTGATATCCCAAATCTTGGCGCCAGCTCGTCCAACGCAGAGGATTCTGCAGTGAACCTATTCATTCCTTCTAAGATTATACTTACTGGGCAAAAGAAAAAGACGTTTCACAAGGAAGAGCTGACCAAGAGTGATGCAGAGAGGAGAGTGCAGATTAAGACAGAGCATAATGCACAACTGACACAGAATAGGCAAAGTAGACGTCAGAAGACCCCTGAGAAAAtagacaatggtggtggtggtggttatggtgttgttattgatgatgatgatattgatgatgataatggtgatgataatgatgttggtggtgatgatggtgttggtgatgatgatgataatgatgttggtggtgttgatggtggtggtggtgttgatggtggtgttggtgatgatggtgttggtgatgatgatgataatgatgttggtggtgttgatggtggtggtggtgttgatggtggtgttgatggtgttggtgttggtggcgatgatgataatgatgttggtgatgatgatgataatgatgttggtggtgttgatgatggtgttggtggtgatgatggtgttgatgatggtgttgatgatggtgttggaggtGTTACTAAGCCCGACCCCAGTCCTTCCTCACCAAGACCCACCACAGCCCCAGCTCCCAGAAATAACAAACGGATACGTTTATCATCATCAAGCGGTGGTCAACACGACCTTACCCTACCCCTAAACGTAACCTACACCCAATTACAACAAGCCATCGAAAACGCACTAGGGGTACCCTCTAAGGAGCAGAAAATCAGATATGGTTTCCCACCACGTTTGCTGCACCCCCCTGAAGAAGGCAAGGAAGAAGAACCAATATCCATACAAGATGGAGATAAGGTGATGGTAGAAGTACTGCCTCCCCCTAAACCTGAGCCTGCACCTAAAGAAAATTGGGATATTCCGGAGGAGAAGAAAATGGATGTCGCTGGTGCTGTGGGAGAGGAGGATAGGTTAAGTGCTGAAGAAACTTCGAAGGAGAAGAAAACTGAGGATTCGCCTATGGATGTGGATGTTGATACATCAGCATTAGCGTCAGCACTAATGAGTGCCCTGACGAGTGCCATGCCTAACGATATGTGGGAGATGGCATGTAGAAGCCCTGATATGTTTGATAATGGCGGATACTACTACAACCTTGCCTTTAACAGCCTTGGAAACTTGGCACATGACCAGCATTGTACCCTGCCTAACCTCCCAAataagGTCTTTGCATACAACAAAGATAAAGATCGTTTAGACCTTTGCCTTGGTAAAGTCCACGTACGTGCCCAACCAATCACCCAAGAAACTTTAGCTACTGGTCAGCGGACTCCCCACCCATCATCTTCTGTTATAAACACCGAAGCGTCATTCAGTGGAGCGATAACTAACCGGAACTCGAGTCGGATGGCATTCACGGGGGAGGGAAGGTCCATGTTGGATTCGTCATCTGTGTCACCAAGGCAACCAGAAAAACAACAGACATCCAGTACCTCTACTACGACAGAAACTTCAGTAATTACTCCAAGTTTACAAACCGCAGCACCAGACAAAGGGTCCAGTGAAACAACAGTCGTAGCCAATGAGAACCCAGTCTCAGATCAATACGTTGGAGAGAGAGCAGATACTGAAATGGCGAACGAACAGGAAGTAGATATAGTTGCCATGGAAACTACTCAAGCCGGAAGTGAACAGAAACCTTTGGACCCAAAGGAACAGAGCCAACAAACATTTGGTACAGCGGATGTCACAATGGAAGGTTCGACGCATGCACGTGTCAATGAAGGTCCTGCTATGTCTGAAGAAAGCCATAAAGATGTTGGTCCCGATTCTATGGAAGTTGAAacgggattccctcgggacgagatcccgaatcaagccactgaagtaaccgcggagaccaaagatgctaccacagggaacccaagctcagattccttccacgaggacacgggattccctcgggacgagatcccgaatcaagccactgaagcatccacggagaccaaagatgctaccacagggaacccaagctcagattccttccacgaggacacgggaatccctcgggacgagaccactgagaccaaagatgctaccacagggaacccaagcttagattccttccatgaggacacgggaatccctcgggacgagaccactgagaccaaagatgataccacagggaacccaagTCCAGATTTATGTACAAAAGAAAATAATTTAGAGGAAAAAGAAGCAACAGAGGAAGGAGTCAACACACCCAATGATCCCAGTATCTCCAAGGAAACAGACCAATCCGCCGTAACTATAGCAACGTCTGATGAATCAGAGTTACTGAATGACGAATCGAGCCTGTGTAAAAGTAATGAAACTGTAACCATAGCAACGCCTGAAATGACGTAA

Transcript

alvinactis_v1_g23100

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21403	OTU1_UBXL	OTU1, UBXL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR039087	Family	Deubiquitinating protein VCPIP1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0035871	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168	Biological Process	Golgi reassembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-