Gene detail

Detailed information of alvinactis_v1_g23027 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g23027	SPARC OSTEONECTIN	chr_12	7719105	7730427	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g23027

ATGTGTCCTTACCATGGACAATGTCAGGCCCACAATAATGGCAGTACATCGTGTGTCTGTCCGTTGGTTTGTACCATGGACTGGACTCCCGTGTGTGGAACTGATGGCAAGACGTACGGTAACCAGTGCAGCCTGAAAGCACGTGCATGCCAAACGAACACCATGGTAACAGTTGATTACGATGGAGAGTGCAAGATAGctcaagatccctgtgatgatgttgtgtgtgaaaactacggcaaTTGCATGGTCGATGATAACGGCAACGCGTCATGCGTGTGTCAAAAGTTCTGTACATACGAATGGAATCCAGTATGTGGGTCGAATGGAACGACGTATGGCAACTTGTGTGAGCTGAAGGCACGTGCATGCGAGGCACGATCTAATATAACAGTTGCTTCTGAAGGAGAATGTCCATCAGGCGGAAACAAAACGGAATGTCCCAAGCCCTGGAAAGGAAAACATGGAGTCTGTGATCTTCGTGGAGACATGTGTGACGACAATACCCATTGTCTGTTTGGGCAGATTTGCTGTGAAAATGGATGTCAGAGAGATTGTGTTTACCCCGACGGCAAGTCTCCTTGTCAAAAGCACAAGAACGCTGCTCTCTCACGACCAATGCCTGGTATGTTTGTGCCAATATGCCACGCAGACGGCCATTATGATCGTGTCCAATGTCACGGTTCTACTGGTTACTGTTGGTGTGCAGATCAGCAGGGCAATGAGCGACCTTACACTCGCATAAGAGGAAGACCCAACTGCAATCTGAACGTCGTTCCTGGATTTGCAGCAGGGGTCAATGGTTCGTGTCCTCAACCTACCAAGGGTCGTGATGGTATCTGTGATCGAATGGGAGACCGATGTACGATTGATTCAACTTGCAGTGGTGATAATGAGAAGTGTTGTTTCAATGGATGTCAGAGAGATTGCATAGATGTCGTGGCTCCTCCAAAAGAATCGAAGTTGAAATGTCTGTCTTACCAATGCACAAAATCACCACTTAAAATATTCGGCAAGTGTTTGCCTGTGGAGACTGAGTGTCCTTCAATGTTCAATCGATGCACAAGGATAAGTATATTAGTAGAAACGTTTCCTGGAGTAGCTAGCTCGAGATTCCGTCAAGAAAGTGGCCTTTGCTCCATCGAACAAGCGTGTGGTAGTGACCAAGCATGTAACTTAATCAATAAAACGGGGATCAACATCAAGTCATGTAAAGTCCATTGTTGTACTGGAGATCTTTGTAACAAACCAGAACTGGGACCAAAAGTAATAGATAAGAGCAAGCAATGTCCCAATCCATGGAAGGGTAAGAATGGCATATGCGACAGACGTGGAGACATGTGCCATGGTAATAACGACTGCCAGTTTGGACAGATATGTTGTCATAATGGATGTCAGAAGGATTGTGTTTATCCAGACGGTATGTCACCTTGTCAAAAACATCTGAAGACTGCCAATGCCCTATCTGAACAAAGAATGGTTGGTCACTTTGTACCAACATGCCGTGCAGACGGCCATTATGATCGGGTCCAATGTCACGGTTCTACTGGTTACTGTTGGTGTGCAAATAAATATGGCAACGAGCGGCCTTCCACTCGCATAAGAGGAAGACCCAACTGCAATCTGAACGTCGTTCCTGGATTTGTAGCAGGGGTCAATGTTTCATGTCCTCAACCTACCAAGGGTCGTGATGGTATCTGTAATAGAATGGGAGACCGATGTGCGATCGATGCAACTTGCAGCGGTGATAATGAGAAGTGTTGTTTTAATGGATGTCAGAGAGATTGCATAGATGTCGTGGCTCTTCCAAAAGATCCTTGTGATGGAGTCGTGTGTCCTTACCATGGACAATGTCAGGCCCACAATAATGGCAGTACATCTTGTGCCTGTCCATTAATTTGTACCGCGGATTACACTCCCGTGTGTGGATCTGATGGAGTGACGTACGGTAATCTGTGCAGCCTGAAGGGACGTGCATGCACATCGAGAACCATGATAGCAGTTGATCATGATGGAGAGTGCAAGAAAGGTATATATGATTATATCGAGAAAATCTATATGTCGGTTCGTGGAAATAGTtcttcataa

Transcript

alvinactis_v1_g23027

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00086	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF00095	WAP	WAP-type (Whey Acidic Protein) 'four-disulfide core'	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000716	Domain	Thyroglobulin type-1	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR003645	Domain	Follistatin-like, N-terminal	Interproscan
IPR008197	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR036645	Homologous_superfamily	Elafin-like superfamily	Interproscan
IPR036857	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13866	SPARC OSTEONECTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005518	Molecular Function	collagen binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030414	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan
GO:0050840	Molecular Function	extracellular matrix binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-