Gene detail

Detailed information of alvinactis_v1_g22216 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g22216	VITELLOGENIN-RELATED	chr_11	19203483	19229519	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g22216

ATGACTAACTTATGGCAGATCACCAGCgacctgatcaccagatattctccaaagcgaaccctacgttcctcatctgatcttctcttaaaccacgtcaatttcaacctcaaatcctatggacgcagagccttttctgtggctgccccaccactcgggaacaatcttccacctgatctacgtaaatATATGTCTCTCCGTGGTCTGATTGGACTATTGTTGGTATTCTCAGGACTTCTGTTCTCAGAAGAAGTTGCTGCTGCGGAGTGCAAAGCAAAAATGGGCGAAGTCAACAAACACCCTCTTTGGGTCGGATGCAACTTTCGACAAAGTAACTCAGAATGCATTCTGGAGAACTGGGAATGCGACAACATGTTGGATTGTGATGATGGTTCAGACGAGAGTTTTTGCGAAAATAGACAGATTTGGACTTACCACTATACCTACACTGGAGATGTGTTCTTCCCCAATCGTGCGGACGGTTTGTACATCACTACTTCTGTGTTGCTTCAACAGCAAAAGCATGGAAACAATTACATCAACACAATGACGTTACAAAACCCGAAACTCAGCCAAACTACCAGGCACACAAAAAATCTATTATCAGACGATGAAATAGGAGTTTGGGAGGAGGCAATCAAGTTTGAAGTGTTAGAAAACGGAGCAATTGCTAAAGTTTACACCAACGATGATCACCCTACCGATGTGTTGAATATCAAGAAATCCATCGCCGCGTTGTTTCAGTTCAAACTGAAATCCCAGGAAGTGGAATATGAGAACATGGAGACTAATCCTACGGGAACATGTCGCATGAAGTACAGAATCAGTAACCAAACGATTAACAAGCAATATGGAGGAAACACGAGAACAAAGCATCCACTGTACAAGTATAACATTACCAAGACCAACGACTACACTGACTGCCAAGACAGACCAGTCTATACCTTCACCAATGTGGAGCCTGTAAAGTGCAACGAAGAAAAAGGGCTGCAGATCCCGAAGTCCCGGATGATGTCATCTTGTATAGTATACAAGCGCCAAAACGGGCAGTCATTTCTACAGTCTTGTCATACTCGCGAACGACATGAGGTGAACTTATTGGGTAAAAGCGACACCCCATTTGTTGTTATCACTGAGGCAAGAATTAAGTTTGTTCAGATGGACTCAAGAATAAGGAGCTATGATGACTTCAATAGCAAAAGGTCACTTCTCTTCAGCTTTGAAGGTCTTACTAAACCAAGCGTAAAACGGTTAGACAACGACTTAATAGAGAAACTTTGCGAGTCTCCTAAAATGAACGCCACTGTGTCTACAACATGTTGGTTGGCATTTGGTTCGCTAGTCAGAAGTTATTGTGAAGACAAAAGTGTCCCGTGTCCAAAAGAATTTATAAAGATTCTGAAAGATAAATACGATGAAAATCTTCACAGCCAAGCTGGTTATCATATGAAGACTATTAAAGACAACGAAAAACTAGTCGTCGCGTTGAAAGCCATCGGCAACGCAGGACAGATAGAACATTTGCCTCTCGCCTTGCACATCCTTACCACTTGGAACGACCACAATGCCATAATGATTGCCGCAATAGAGGCCATCAGGCGAATGCCTCTAGAGGGATCTGATTTATCAAAGGCGCAGTTGGCACTTCTAAATATCTTTAAGATGAAGAAAATGTGTCCTGAGATAAGAATTGTGGCATTTGGTGCCCTATTGAAGACTGGACCAACACCAAGCATGCTAATCCAAATGACGAATACCATCCGGTCTGAGGTCATTCCAACAGTAAAACATTATGTTTACACATATTTGAACTCAGAATTGAAGGCGAATTGTCCAGCAAAGAAGAGCTACAAAGCGAGTGTCAACCTACTTGGTCGTCTTGCTAATGTACCCCATGAGGGATTTGACCCACGTTATTCATTCTCCTATTTGCACCAGTTGGATGCTCTGAGTCCTCTATACAAATATTTGATAAACATCGAAACTGTCCATACACCATTAAGTGCGATGCCGAGATTTGTGAAGTTTAAGAACACAGTGAGGATGATGGGTCTTGATGTTGACCACATGGAGGTTAAACTTCGACAGCGTGAGATCGTCCCGCTGATCCGAGACCTGATTGGACCTCATGGCTCAATTTACGAAAAGAAATCCTTATGGGACTTCATCCGCCCTAAACGTAGTGTTGATGATCAAGGTTTCCCGGAAGTTTACAGAACAATGCAAGAAAAGATCAGTCCAAAGACGAAAGGAGATTTACCGTTCAAACTTACTCTGTCTTCCAAATTGTTTGGTTCTGAAATAATATACTTTGTTCTTAACGAATCAAACCCCGTCATCCAAAGCCTTGTCGATGATGGAACCATCAAGGTAGATAAGGATTGGTGGAGCAACTCGCTGACAGCCGGAATGCATTTCAATTTGTCAGCATATGACCTTCTGTTCAACTCCATGCTCATCATTCCTACTTCAACGGGATTACCGTTGCATCTCAGATCCAACATGGCGGGTACATTTGCGTATAATTGTTACGGTGAACTTACAACTTCTCCAATGCTGAACCTACTGTCATGGAATAACAGACCCAATGACATCTCAGGGACGTACAAAGAATGTTATAGATATTCTGGTTGTTTTACAGCATGTCTACTTACAGTAATTCCAGGATGTATTGGTTTTATCGCGATACAAGAATGGGTTATGAGATACATCATAGCACGTCGAGCCGCTGTCCAGTTCCTGTCGAAAAGATCACTTTTAACGTACAGAAACCATGGCAAAAAGTGA

Transcript

alvinactis_v1_g22216

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01347	Vitellogenin_N	Lipoprotein amino terminal region	Repeat	Interproscan
PF09172	Vit_open_b-sht	Vitellinogen, open beta-sheet	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001747	Domain	Vitellogenin, N-terminal	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR011030	Homologous_superfamily	Lipovitellin-phosvitin complex, superhelical domain	Interproscan
IPR015255	Domain	Vitellinogen, open beta-sheet	Interproscan
IPR015816	Homologous_superfamily	Vitellinogen, beta-sheet N-terminal	Interproscan
IPR015819	Homologous_superfamily	Lipid transport protein, beta-sheet shell	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR050733	Family	Vitellogenin/Apolipophorin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23345	VITELLOGENIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-