Gene detail

Detailed information of alvinactis_v1_g22128 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g22128	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	chr_11	18436546	18446841	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g22128

ATGACAGAAACTCAGTATGAGAAAGACTTGGATGGACGCTGTGACTTGTATAGTTGTGGGCTGGAGAGAGACGTTGACCAATTAGTGTACACACGAGGATACGTCTTCCAACAACTCAAGCCAGCAAAGGTCGAGCAAAGGTGCAAAAAAGATATCGATAACTGCAAACTACATGACTGCAAGAACGGATCAACGTGTGTTGAACAGATTAATGGTTACTACTGCGCATGCCCACCACAGTATACTGGGAAGGATTGTCGTACAGATATCAATGAATGCCTTAGTACGCCTTGTTATAATGGTGCTACATGTATCGACGTGATCGGTGGATACATTTGCAACTGTGTACCGGGATATACTGGACCCGAATGTGAAGCAAGTGAGTTCGTATGTCTTAAACTGAAGTATTTCTCATACCTGAATTACAttggtcggttgATATTAAAGAGTGCAAAAGTAACCCGTGCATCAATGGGATATGTAACGACCTCATCAACGGATACTCGTGCAGCTGCACACCAGGGTATAATGGCACTAACTGTGAAACAAACTCCCAAATGTGCTGTGGCAGACGATCCTTCTACGACCCATGCCGTTGCCAATATCGCCGAGGGAGACACCCTACAAACAATTCTGGAAACCGTTAAACAACTTTCTATAGAAATTGGAAGCATAAAGACAGAGAACAAGGTGCTTCGAGCATTGGTGGAACACCCCAATCCGCCACTTGCTAAACCAGAAAGGCCGATGCCGTCGGCAGAAAAGGTCACTCTGCCCGAGTTGCGGGCGATGGAGGAGTTGGCAAAAAAGACGGACCGCCAAGTGGAGAAGTATGGCCTAATATCCACCGATTCTGATTCCAGCGACGAGAGCGACGCCGACAGCACACAGAGGTCTGCTTCCAAACCATCAAAGAAAGctgACGGTTTTGTGGCTTCACCACTGAACACGGTACCGAAACGAGATTCATCTGAACGTCGAGTGATCGTCGATTTAAGCTGGCCTTGTGGCTCTTCGGTTAATGACGGTATTCCCAGTGATTCTTTCCTTGGAGAGTCACTCCATTTAGAATACCCGACTATCGATGTTATTGTGGACGCTGTTATTGCTACGGGTCCTGGTTGTATGATTTATAAACGTGACTTACGTAAAGCGTATCGACAGTTTCCGGTTGAACCGAGAGACTATCATCTCTTAGGTTATACATGGGATGGATGTTTTTATTTTGACACAGTTCTGACTATGGGTCTTCGTTCGGCCGCGATGGCTTGCCAGCGCTCAACATCGGCGGTCTCCTGGATCTTCCAACAACGTGGACATTCTTTGTTTAATTATTTGGACGACTTCATTGGAGTTTCTCTGCCATCTACGGCCTCTGAAAATTTCATCGAGCTTGGAGAATTATTGCACGACTTGGGGCTGGAGGAGTCGCCAGAAAAAGCATCTTCACCTTCGACAGTCACTGTGTGCCTCGGGGTCGAGCTGGACACCCTTGCGTTTACTTTGTCTGTGAGTGAAGAACGCCTCAATGAAATTCATATTTTGCTCACGAAATGGCTCACTAAACGCACTGCTTTCAAATCAGAGTTGCAATCACTGGTCGGGAAGTTGGTTTTTGTTTCGAAGTGTGTTCGCCAAAGTCGGGTATTTATTGCTCGCATCCTTCGTCTATTACGATCTGTAAAATTCAATCATCATCACGTCAACCTAAATGGAGAATTTCGCATGGACATTCAATGGTGGTGGTGTTTCCTGCGGGACTATAGCGGCGTGTCTATGATTAACACTTCAGCATGGTCAAAACCTGATGCCCTTTTCACAACGGATGCATGTCTTACAGGCTGTGGCGGGTTGTGCATCGACCAATACTTTCACGCTGTTTTTCCAGAATTTGTGTTATCTATGGATCTTGACATTAATTCATTGGAACTTTTAACAATtgtgcttgccttaaagctgtggggaaaccgctggcgcggattacgtctcactgtgcgttgtgacaacgaggtggcagttacggtgctcgcatcgggacgatgccggagttcatttttaaactgttgtttacgtgaaattgtgtttgtatcagcctcatttgattttgatctgcgagctgtccacgtgcctggggtatccaacagagaagcggacgttctggcacggtggggagtcaattctgcagcaaaggaaacctttctacagcgcgccatcaaggataatctcgtggaaatccctgttcccgatgacatgtttaaacttaacactatttggtga

Transcript

alvinactis_v1_g22128

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-