Gene detail

Detailed information of alvinactis_v1_g22106 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g22106	PROTEIN CBG26694	chr_11	17970530	17979240	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g22106

atgcaggagtctcacgttgcccagtgtagccactgtagaaaagaagagggagtagatccacagtttatgagatgtaaacagtgcaaaagtgttatgtattgttctgttgattgccaaaaaggacactgggtagagcataagatctggtgtcaagcaattcgaagaatttcaaaggaacaatcttcaagtacccacaactttgttgatccagcacatgttagtcatctaactccaaatgaacgtaagaaaattaccgggttagtgggaagtaagtgtttagtcaagtgtttgttcaacaatgttcatcaaaatgccttatgggacacaggtgcacaagtgtctgtgattagtgaaacctttctaagagagtacctgaaaggggtgacagtgcatccgatatctgaattgattgatcacgaactgaacttaactgctgcaaatggaacaaagattccctactcggggtgggtagagattaatgtaaggctacttgaccctccagaaccaggaagcgcacaacaagatttaactgtccctttcttagtaacgaatgaacagttacaatcccctatcattggatacaatgtcatagaggagcttctaaaggagaacttgaaccccaaacaaatggaagcggtttacgacagcttcccagggaaaagtgacaaggatattgatactcttgtgaatttcattcagtgcgaagcatcaggctatttgtgtcaagtaaaaaccggaaagaaagctgttgttatacccaagttgaaaactgtttatgttaattgttttgtcaaaactgggcctattgacgatatagctccagtgatgtttgaaccaatagaacagacagagttgcccgaaggcatagaattacaagatagcctgctttatgtcaaacaaggaaattcctcgaaagtcaaaataccagtccataacatgtctggccatgatattgtacttggaaaccgagctaatttaggacacttacaactagttaaatcagtcacggcaatggatgtcaagctgtgtgaaacccaagtaagtcaggtctcacaatcgacttctgacagtgagaggtcacccgcaccggctgaggaggaaagtgtaaagggtcctggcccactaccacctgtagatctcagtagtctaaataaggaacagtatagtgttgtagcacagatgttgatggaagaacatgaatcattcgcaacgagtaacgaggaccttggttgtataccagacctagaaatgcagataaatctgacagaccagcaacctgtccagaaacgctacacatctgtacctcgaccactatacccagaggtaaagcagtacattgaagatttgttgaatcaaaacatcatcactaaatctcagtcaccatattcatcgccagttgtgtgtgtacgtaaaaaggacggttcactgcggttgtgtgtcgattacagggaactcaatcagaagtcattagcagaccgacatcctatccctcgtgtgcaagagtcattggatagtttaggaggaaacacgtggtttagtgtacttgatcaaggaagggcttaccaccaaggtttcatgcatgaggacagtagagcttacacggcatttataacaccgtgggggctctatgaatgggtgcgcattccgttcgggctaaaaaatgcacctgcaaacttccaaaggtttatggaaagatgcctggatggtctgcgtgaccaaattgcaataccttaccttgacgacgtcatcgtctttagccaaaccttcgaggaacatgtggagaatcttaggacagtgttgcgccgattgcgtaaacacggtgtgaagttgaagccaaaaaagtgtgacatgtttaagcatgaagtgaaattcttgggaagaatagtgtctaaagacggataccgtatggatcctaacaacgtgaaagcagttgtccagctgaaggatttacatcctaagaacgttggagaagtacgtcagatagcaggcttgcttagttattaccgacggtacatcaaggactttgcaagactcgcaaaacctatctatgacttaatcagtgaagacaaggtgggcagccagaaaaagaaagtaggacaacggccgtcaaaggaaccggtttgctggacaaaggaacaccagactgttctccagaacctgatcgagaagataaccagtccaccagtcatggcctatcctgacttcacattgccatacattctaacaacggatgccagtaaggatgggctaggagcggtcttatatcagaggcaggatggtatcacgagggttattgcgtacggctctcgatcattaacgaaacctgaaaggaactataacatgcatgctggtaaactggagttcctggcactcaaatgggcagtgactgaacagtttcgagattatctctaccactcaccaggattcacagtgtatacggacaataatcctttaacctacattctaactactgctaaagtcaatgcaacctctctccgttgggtgaatgaattagcagactttcacttcaacattaaataccgcccaggaagatcaaacgcagatgctgacacactgtctaggataactttggacatcaatggatacatggacaactgtaccgaaactataaatggagaagcatttagtacagtaacgaacgcgactcgcgaggcaaacaacccatcaacagcctggttgtcgtcacttacagctgtcccatgcctgaatgaggaagagtacccagatgtagaccttcaagtaatatcaacgacagagttggctctagctcaacaacatgatccagtgatcagcagaatccttcacttcaaagggaatgggaaacgacctagttgcgctcaaaggaaagaagaggcagcaccagtgaagcaaatgttacacgagtgggacaaacttcatgtcgaaagagatggtattctataccgcaaatctggcctcaaggatcaaacagtactaccaaagaagtttcgaaaagctgtttacacccagctgcacgatgacatgggtcaccttggtgctgaaaggacaatcgaactagccagagaaagattctattggccatatatgcagtcagatatcacccactatgtaactaaagtatgcagatgcttaaaacagaggaagccaacgacacacacaagagctccactacgtcccatacacacgactgcaccctttgaactggtgtccttggactatctacacctggataaaagtgttggtgggtatcaatatgttctagttattattgatcatttcacccgattcgcccaagtttatccaactaaagataagacagcaaagaccactgcaaataaactgttcaatgattacatcctaaggtttggattcccacaggcaattcaccacgaccagggtggagaattcgaaaatcaactgttcaattacctggaaaagctgagcgggataagacactcaagaacaaccccatatcacccacaggggaacggccaagtagaaaggttgaatagaacactgctagcaatgctgcgttccctaccagaaacacaaaaatcccgttggcctgaacatttaaacaaagtggtgcatgcctataattgcacgcgtcatgattctactggattttctccatttctcctgttatatggaagaacaccaagattgccaatcgacataatgttcgggttgaagccacctcaaggctactgcaactacccagcatatgtgaaacagtggcgagaggccatgcgagctgcttacgaattagccaatacacaagctagcaaaagtgcaatgattggaaagcagcagtacgacaagaaggtgagacacactgccttgcaggaaggtgaccgcgtactggtgcgaaatcttagtgaacgaggaggtacaggaaagttgcgctcttattgggaagacttcatccacatcatcaagagccagagaggagacctacctgtctatgaagtcatacgagaggatggtgaaggaaggaccagagtactacacaggaatcttcttttaccttgctcctacttgccagtgggagacgagagcgtccaaagaacgaacaacaagcagaatgaccggagcatacgcaaccgccgacaaacaggaaggcaaaagcccaagactCTTCCTCTGGGAAGAGGGCAGAACGCTAGGCGTCTAGATTCAGATTCAGAAGAGGAACTTACAGGATTCACACCCCGGGACCTCAGGGGGCTGCAATGGACAAGTCAACAGGAGACAAGTCAAACGACACCACCATCAGAACCTGACGACCCACCGCTTGCAACAGTTGATTCAGAGGTGCAGTCAGATGTAAGCGACGTTCGAGACAGCACAGATGATGAAGTCCCACCAAGACGGTCAGGACGAACAAGGCAACCCAGACAAATATTCACGTATGAAAATCTTGGGGACCCCACACAAGTCAGCTACCAAGCCAACTCCATTGAGACACAGACAGGACGAGTTACTGGTCAGCCAGGTAGTCCTTATCAAGGTACTCCAATGTTTGGACCCTTcacaacaacacagagttacgggtatccacccacagcaacacagagttacgggtatccacccacagcaacacagagttacgggtatccacccacaacaacacagagttacgggtatccaccGTGGTACTTCCACATACCACAACCAgatcgacaaaaaattcatccttatcatggactttccatggcagatctttttaggaaaacgtgtcgtcgcacacaacggttaaagaccttagggtacaaagtgattgaaatgtggagtcaccaatgggatgtcgagcgtgaacagtacctgtcgttatttaatcaattaacatttgaagcccgccgaccaatattaccacgtgaagctttaatgggtggtagaacaaatgctattcaactttatgcatgtactcaagattcaatttctgaagatgagcaagacgtcggtgcaagtactttgatcagttcagaccctgtgcatcgaatacgatatatcgacattgtttccctttatccaaccgttatgtggaaagaagcgtatccattggggcacccaaaggttctgtctggaatatctccagaacttcaatcggtacaccacgtttgggatggtacatggtttggattagttaaatgcacggttgaaccccccagaggtttattttttccagttctcccacaagtgattcaatccaaattgatgtttacattgtgtcgtacttgcgcagaaactctgaatcagactgaagactgtcatcaccaatcagatgaaaggtgtttgaccggggtatggaccacacccgaattgactgaagcggttcgtcaggggtacaaggttcgccaggtctacgaagtgtgggattatgaaaaacaaagtaaagatttgtttcgtgattacattaaagaaaatctacgattgaaattgcaagcttccggttggtcgtctaacactctgtctgacaaagacagagatgactttatttgtttggtaaaaaacatttatgacataacaattgaaaaggaggacattgagataaatccaggacttcgttccatctcgaagttaaatctcaactgtttgtggggtaaatttggtcaaaatccttttaaggataaaacaatattcatcactgatcctgaagagtattttagacttcttcatgatgatactgttcaaatgttaaacgtgttgttgtttgaaaataatccacacatcgttcaagtgagatataaattatttaacgaagctgtggaggataacccgaacggaaatgttgtcattgcttcatttgttacctcgtgggctcggctgcggttgtatcaagttatttcatcattgaaagaaagagtactttatcatgatacagacagtgtcatttacactactttgaacgataaagaagacgaaatccccaccggaagtctgttgggtatgtggtctgatgaatgtaaagatccaatcaccaattgggtgcaagaatttgtgagtttgggtccaaagacctatgcttacaacaccaaaaaggagcaaattgtcaagtgtaaaggtatctcgttgactccgcaggcaaagaaactggttcacatgcgctccatgttgaatctgcttgaggagaagaaacacaatttgaaagtacattacgataaacatattgttcgggatgtaaagaccaagcgattgaaaatagtatctatggataagttgcttaagtttgtctataacaaacgaagGACGGCGGTTCACATGAGTGCGATGGGTACAAATGAAGCACGTGAGCACAAAATCCCGATATCACTACAACACGACTACTGCTCTGTCGCTAGACGACATTGGACGGTGGTTCACATGAGTGCGATGGGTGCAAATGAAGCACGGAACCCAATATCCCGATATCACTACAACACGATCACTGCTCTGTCAATGGGGACAAACTCTTTAAAAGAAGAGGTGACTCAACTGAGCGACTCATCAATTCAGGATCTTTTATTGCTCTACAATTCTTCTGAATTACCATATTTCGTTACCATACGGTACCCTAAAGATATTTTGGAACATAGAATTGCGATAGAAAAAGAAGCTGCCAAACGTGGCCTTCATGTATCTATCCCTCAAAACATCTATCCGTTCAGAAGCAGCGATTTACAGTGGGGAAGTATGATGTCAATGATAGATGATGAACAAGAAATGTCGCGTCAAACTTTATCTCCTCTTCCAAAGTCCCCCAATCAAATTAGTATAGAAAATGAGTTAGTAGCACGACAATTGGATGAATACAGTCGTCATGTTCAAGATGAACCTTTGCGGAGAAAAGCATCTATGTTTGCTTCTCTTCTAAAGAACAGGCCTTTTATTTTGTCTGATCAAGACCAAAATGAACTGGACACTCTTCTGGCTCGTTTGCGAGAAACCCCCCGATTCGAACCTAAAGAAATACCGCTTAATGAAGATATTATAATGATTGATTTTGGTACTGCAATGGATATGGATTCCATCGATCCAGTTGTGCGTTCATCTCTGAATGAAAACACACAAAGATCAAGTGGTGGTGATGATCCGAATCCTAATGGTGATGCACTGACTTCAAATGGGGATGAGTTTCATTTAAGTGGTGACCAGTCGCATACCGATGGTGATGCATTGGTTGTAAATGGTGATGAAATCAATAAAAGTGGTGAACAGTCGTTCATAGATGGCGATGACCTTCACTCATCTGGTGATCTTCTTCAAGATTTTCCCTCATATTTGAAACGCATCGAAGACATTAAACATCCGAACGAGGCAAAAGAGTTAGATTTTCATTCTTTTCCCATAGAAGATTTGAACCTCGATGAAAAGTTTCAATTTAGTAGAGTATTAAAGAATTTTCGTGATCTATTTCCTAAATTAAGGGAACAAACCTGGGATGTTTATCAGAAGATAGTGGCTGCAACTATTTGGAAAGGCCCATAG

Transcript

alvinactis_v1_g22106

Protein

alvinactis_v1_g22106

MQESHVAQCSHCRKEEGVDPQFMRCKQCKSVMYCSVDCQKGHWVEHKIWCQAIRRISKEQSSSTHNFVDPAHVSHLTPNERKKITGLVGSKCLVKCLFNNVHQNALWDTGAQVSVISETFLREYLKGVTVHPISELIDHELNLTAANGTKIPYSGWVEINVRLLDPPEPGSAQQDLTVPFLVTNEQLQSPIIGYNVIEELLKENLNPKQMEAVYDSFPGKSDKDIDTLVNFIQCEASGYLCQVKTGKKAVVIPKLKTVYVNCFVKTGPIDDIAPVMFEPIEQTELPEGIELQDSLLYVKQGNSSKVKIPVHNMSGHDIVLGNRANLGHLQLVKSVTAMDVKLCETQVSQVSQSTSDSERSPAPAEEESVKGPGPLPPVDLSSLNKEQYSVVAQMLMEEHESFATSNEDLGCIPDLEMQINLTDQQPVQKRYTSVPRPLYPEVKQYIEDLLNQNIITKSQSPYSSPVVCVRKKDGSLRLCVDYRELNQKSLADRHPIPRVQESLDSLGGNTWFSVLDQGRAYHQGFMHEDSRAYTAFITPWGLYEWVRIPFGLKNAPANFQRFMERCLDGLRDQIAIPYLDDVIVFSQTFEEHVENLRTVLRRLRKHGVKLKPKKCDMFKHEVKFLGRIVSKDGYRMDPNNVKAVVQLKDLHPKNVGEVRQIAGLLSYYRRYIKDFARLAKPIYDLISEDKVGSQKKKVGQRPSKEPVCWTKEHQTVLQNLIEKITSPPVMAYPDFTLPYILTTDASKDGLGAVLYQRQDGITRVIAYGSRSLTKPERNYNMHAGKLEFLALKWAVTEQFRDYLYHSPGFTVYTDNNPLTYILTTAKVNATSLRWVNELADFHFNIKYRPGRSNADADTLSRITLDINGYMDNCTETINGEAFSTVTNATREANNPSTAWLSSLTAVPCLNEEEYPDVDLQVISTTELALAQQHDPVISRILHFKGNGKRPSCAQRKEEAAPVKQMLHEWDKLHVERDGILYRKSGLKDQTVLPKKFRKAVYTQLHDDMGHLGAERTIELARERFYWPYMQSDITHYVTKVCRCLKQRKPTTHTRAPLRPIHTTAPFELVSLDYLHLDKSVGGYQYVLVIIDHFTRFAQVYPTKDKTAKTTANKLFNDYILRFGFPQAIHHDQGGEFENQLFNYLEKLSGIRHSRTTPYHPQGNGQVERLNRTLLAMLRSLPETQKSRWPEHLNKVVHAYNCTRHDSTGFSPFLLLYGRTPRLPIDIMFGLKPPQGYCNYPAYVKQWREAMRAAYELANTQASKSAMIGKQQYDKKVRHTALQEGDRVLVRNLSERGGTGKLRSYWEDFIHIIKSQRGDLPVYEVIREDGEGRTRVLHRNLLLPCSYLPVGDESVQRTNNKQNDRSIRNRRQTGRQKPKTLPLGRGQNARRLDSDSEEELTGFTPRDLRGLQWTSQQETSQTTPPSEPDDPPLATVDSEVQSDVSDVRDSTDDEVPPRRSGRTRQPRQIFTYENLGDPTQVSYQANSIETQTGRVTGQPGSPYQGTPMFGPFTTTQSYGYPPTATQSYGYPPTATQSYGYPPTTTQSYGYPPWYFHIPQPDRQKIHPYHGLSMADLFRKTCRRTQRLKTLGYKVIEMWSHQWDVEREQYLSLFNQLTFEARRPILPREALMGGRTNAIQLYACTQDSISEDEQDVGASTLISSDPVHRIRYIDIVSLYPTVMWKEAYPLGHPKVLSGISPELQSVHHVWDGTWFGLVKCTVEPPRGLFFPVLPQVIQSKLMFTLCRTCAETLNQTEDCHHQSDERCLTGVWTTPELTEAVRQGYKVRQVYEVWDYEKQSKDLFRDYIKENLRLKLQASGWSSNTLSDKDRDDFICLVKNIYDITIEKEDIEINPGLRSISKLNLNCLWGKFGQNPFKDKTIFITDPEEYFRLLHDDTVQMLNVLLFENNPHIVQVRYKLFNEAVEDNPNGNVVIASFVTSWARLRLYQVISSLKERVLYHDTDSVIYTTLNDKEDEIPTGSLLGMWSDECKDPITNWVQEFVSLGPKTYAYNTKKEQIVKCKGISLTPQAKKLVHMRSMLNLLEEKKHNLKVHYDKHIVRDVKTKRLKIVSMDKLLKFVYNKRRTAVHMSAMGTNEAREHKIPISLQHDYCSVARRHWTVVHMSAMGANEARNPISRYHYNTITALSMGTNSLKEEVTQLSDSSIQDLLLLYNSSELPYFVTIRYPKDILEHRIAIEKEAAKRGLHVSIPQNIYPFRSSDLQWGSMMSMIDDEQEMSRQTLSPLPKSPNQISIENELVARQLDEYSRHVQDEPLRRKASMFASLLKNRPFILSDQDQNELDTLLARLRETPRFEPKEIPLNEDIIMIDFGTAMDMDSIDPVVRSSLNENTQRSSGGDDPNPNGDALTSNGDEFHLSGDQSHTDGDALVVNGDEINKSGEQSFIDGDDLHSSGDLLQDFPSYLKRIEDIKHPNEAKELDFHSFPIEDLNLDEKFQFSRVLKNFRDLFPKLREQTWDVYQKIVAATIWKGP*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF01753	zf-MYND	MYND finger	Domain	Interproscan
PF03175	DNA_pol_B_2	DNA polymerase type B, organellar and viral	Family	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR004868	Domain	DNA-directed DNA polymerase, family B, mitochondria/virus	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-