Gene detail

Detailed information of alvinactis_v1_g2207 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g2207	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	chr_1	36094450	36102878	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g2207

atggaggctcgatggaggctcgatctgaaggctcgatATGAATGTTCAGTATCAACACATCAATACCAACGCAAAATGTTCATAATGCCAGATGAACCACGTCAACTGAAGCCAAAGCCAAAACATCCTTTAAAAGTTCATGTCTGGGCTGGAATTTCTTCTAAAGGTGCCACTAATATTGTCATCTTCACTGGCATAATGGATAGCAATTTCTATCAGCAAATTTTGCAGAGGCATTTTTTGCCTTTCATTGCAACTGTGTTTCCAGATGGTCACAGGTTGCAACAAGATAATGACCCAAAACATGTGAGTCGGTCAACAAAGGACTGGATGCAACAAAATGGTGTTAATCATTGGCCTACACCACCTGAATCACCAGATTTAAACCCCATTGAAAACCTATGGGCTGAGATGAAGGGCTATTTATCCAAAAAAATCAAGCCAAAGACCAAGGAAGCACTTATAGCAGGAATACTGTGTCCCAAGAAAAATGTATTAAATATATTTCTCATTGAGAAAAAGTTATACCTTGTGATGGGTGTGTCTAGAAATAATGGTAtgttgactgttgttgtgggtgttgttatgtttgtaattggtggtgatgtcactttggtgggtgtttcgagtatgtttgaaagtgatggaaaggtgactgttgttgtgggtattggtgttcttgttatgtttgtaagtggtggtaatatcactttagtacgtggcggtgttgtgagtatatttgaaagtgatggaaaagtgactgtttctatggctgacgtggtagacgtggtaggtatgtttgtaagtggtggcaatggcattgttgtgggcggtgttgtgagtatctttgaaagtgatagaaaggtgactgtttctatggctgatgtggtagacgtggtaggtgtgtttgtaggtggtggctcttactttgagaaggatccttcaaactacactgttgaacagttgaaacgctggttgaaatgtcgagggctgaagcaaagcggcaaacgtggagagcttatcgaacgtgtgtcagactgcatcagttccggcccagaacaacgtcaagcaagcaacttcagatgtccctatcgctcctcagctggctggaataattttcagtcaaaggatataccgccgtactttaactacggacacatacatcactacgctttggagtctgtcaagacgataatttctaatcctcaacaaaatgaagaagacgaagatgaacaaggccttgcgcatatgacggataaacctctgaaaaatgctcgaaagtacgttaactcggattttgttcacgacgttatggatacaaaatcggacgaatattatttcgcaagagctcacgtatggccatcgatgagaactgatctccctcacaacgtcctcgtaattttatctaacgtaagtggtgctgtaatacatgcttcttgcgaaccatgcaaagtcgccgcattaggtcgttgcagccacgttgtagcagttcttttgtacatacttgatcacgttgaaaagcatggtttcttggctacaccgacgtgcacaagcaagccatgtacgtggaataaagggaaaactcgaaccaaaaaccctcaaaggctttcagacacaaattacaaatcaaaggttcaaaaaggtgatctgaagctgattgattttgatccaaggccgagtatttaccgaaaggtaacttctgaacacataaatggacttgtgagaaacctgcagcctatatctgaagaacaagatgacctatctatgtgggaagtacagttacagatgaaatacaatgattatcctctagatgctgagatttctctaaacctgagggaaaaaaccaagatccttcaagaaaatctcacaccagatgacataatggaaatcccaggaacacagggtcagagtagttgtgatgggtggtttaatgagaggttttggcgattgacagcatcaaaatgcctagctgcatccaagattggtgagcttgtcaaaaaagcagcatccaatgcttcagttcgagcatacattttcattaagtcgcatgtttggaaactagacaaggacaattttcagtcatcctggatgaaatatggcattgaaagcgaggctaaagcaatcatgaagtatgaagagcaaactaaatccaaagtttgccaaacaggactttgggttaatcccaagtatccatttcttggttgctctccagatggtcttgttgatgaggagggactggtggagatcaagtcattgaagatctttaaggaccattctgtggaggatgttatttctggaaaggctttactttctaaggaaataattaataggcagtgcttcagaatccaagatggcaaatgtgtgctaaggctcaaacatgcttatttctaccaaatacagatgcagttgctggtcacagagaggaaattctgtgatttcattttgtatgcagaatgtggcgaagtctcaatcaagagaatatacagggatgaaggtgtcattgctgagattgtatctaacctcactgcattttggacccacactccagatgaattagatgtagcttctattttagtaaatgaagtagcagcaagagcctcaccattgcctatctctgatccaaccagtgatctggtgattatcccatggggtggagtaacaagcacaggtattagattgattaacacctgccctcttgataattggctgatgatttttcaagcactagtaaaatcaaaacaaattgacttgactgacctaactgacacaggttacatcatagagtatgtacttcagcttattgatcagcatcagtttggtgatgcaaaaactgcaacattgacaactcagcctcagttaatctccaatacaataaatttatatggcaatgaggatgactacttcatcaagctcctaagaccttacctatacagcaaagtgacctctacatgcagcctgagtacatgtcctgccccaacagatgtacctacttcatgtactgtgaatctgggattaccagctcatctaagaagcagtatgttcttagattcacttgatgattggcttcaccctgcagcctccatttgtggacggaggtttaatggagaacctcaagcacacataccatgtctccaggatgtcaccctagatgacaatggtatacctcacccatcatggcattgcataggaaaacttgtcaaggaaaacttgtcaaggaaaacttgtcaaggaaaaaggaaaacttgtcaaggaaaacttgtcaaggaaaacttgtcacttggacaacgagaaccaatcacaattcacatgaaaacaattccattttcaaatgtgtacttcagccaatcagcagatagcattctcattgtctag

Transcript

alvinactis_v1_g2207

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02037	SAP	SAP domain	Domain	Interproscan
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003034	Domain	SAP domain	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR036361	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR051703	Family	NF-kappa-B Signaling Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-