Gene detail

Detailed information of alvinactis_v1_g20313 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g20313	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	chr_10	16501525	16517648	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g20313

ATGTGCCCTAGCGACTTCAAAGATCATGTGAAATATACAGAGCATTCGTGTGATCAAGCATACAAGAAGGACAATCAAGTTCCAGTCTGTCCACTTTGTAACCAACCTGTTCCAGTACCCAGAGGACAACAGCCAGATATTAAGGTTGGGGAACACATTGACAGAGATTGTCAATCAGATCCTGCTGTGAAAAAAAGAAATGCATTTGTAAACAAATGCTCACTAAAAGGCTGTAAACAAAAAGAGTTGATGAAGGTGAGATGTGATTCATGTCGTCAGAACTTCTGTCTGAAGCACAGACATGAACAGGATCATAACTGTACAGCTGCGGTAAAGCCAGGTTCAACTTCAGCTGGACAAAAAACATCAGCATCAAAACAAGCAGGACAAGCTGCAGCTGCTAGATTTAAAAGCAAGCCTAGTGGTTCGGGATCAAAACCTCAACAAACAACTTTATCATCTTATGGAATGGACCTTGATAGAGAAAGAAGAGAGAGACAAGCCTCTCAGCAAAGACCAACTCAACAATCGTCTATGAGTGAAGACGAGGCTTTAGCTCTTGCAATACAAGCCTCCCTAGCCCTCAGCAATCAGCCTGGAAcaagccaaaccaacaccaaaccaagcaaaaAATTAACAGCACAAGAGCAGGAAGACTTGGCACTGGCTCAAGCGTTGGCACAGTCAGAGAAAGATGAATTAGAACGTCAGAGAAGGCCTGCAGAGACAATGCTAAGGGAGAATGTTGGAAGGGTTCTCATGGAGCTGTTTGCAGATAAATGCCCCAAAACTGCTGAGAACTTCAGAGCTCTCTGCACAGGGGAAAAGGGGAATACTTCATCTGGAAAACCACTTCATTTTAAAGAAAGCACATTCCATCGAATCATGAAGGGATTTATGGTTCAAGGAGGAGATTTTACCAATCACGATGGAACTGGAGGAGAGTCGATATATGGAGAGAAGTTTGATGATGAAAATTTTGAATACAAGCATGAAAAGGAAGGTTTGTTGTCCATGGCCAATTCTGGAGCAAATACCAATGGGTCCCAATTTTTTATTACCTGCAAAGACACACCTCATCTTGATGGCAAGCATGTGGTATTTGGAAAGGTTATCAAGGGAATGAATGTAGTTAGAGAGCTGGAAAATACTCCTGTTGATGACAGCAAACCTCATAAGCCTTGTGTAATTGAAAACTGTGGAGAGTTAGCAGAAGGAGAAGATGATGGTATACAATGTATGGATGATGGCACTGGTGACTTGTACCCTGATTGGCCTAATGATTCTGGCCTAGATTTTAAAAAGATAGATGATGTGGTTGCTGTTGCAGATAAAATAAAGTTAATAGGAAATGAACAATTCAAAGCCAAAAACTATGAAGTTGCCAATAGGAAATACCAAAAGGCACTCAAATACCTTGAGGAGTTGGAGGAGGACTCAAGTGACAGCGAGGGTGaggaaggagagaaagaaggagagaaagaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagaaggaaggagagcaggagggagagaaggaaggagagaaggaaagagagaaggaaggagagaaggaaggagagaaggaaggagaTCAAGGAGATCAAGAAGAACAAAAAAAGATAAAATATGAAACTCATAAAAAGATCTGGTCTGTGTCTCTTCCATGTTTTCTAAATAGTGCGGCTTGTAAACTTCACCTTCATGATTATGGTGGTGCTGTGCAAGACTGTAATGAGGCACTTGATTATGATGAGAATAATATCAAAGCTTTATTTCGCCGTGGGCAGGCTAATGCAAATATGCATGATTATAGCACTGCAATGTCGGACCTACAAAAAGCTGTTAAATTGGAACCTAAGGATAAAGCAATACGAAATGAAATTATAAAAGTAAAGAAGTTAATGGAAGAACAGAAGAAAAAAGAAAAACAAGTGTATTCTAACATGTTTGCTTCATGA

Transcript

alvinactis_v1_g20313

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00160	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan
PF01428	zf-AN1	AN1-like Zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000058	Domain	Zinc finger, AN1-type	Interproscan
IPR002130	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR020892	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan
IPR029000	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR035896	Homologous_superfamily	AN1-like Zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-