Gene detail

Detailed information of alvinactis_v1_g18938 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g18938	POL PROTEIN	chr_9	23613997	23619306	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g18938

atgctctctcaatgtaaacaccacaaagaagagattaaagaagaacttcaaccaagatcctcgttcttatttTTTTACTTGGCTTTCAAACTGTCCAAACGCGTAAGCACTCGCAGCGTCACACAGCGCGCTCTAAAGTCTAATCATCTTTGCTCGGATTGTAACCAAGATCAATCGACCTCGACATCTACATCACCGCCTgctactcctgacgctactcctgacgctactcctgacgctactcctgacACGCACAATTTAACTACGCACCACGTTACAACTGACACTATGAATCCGGAACAGTTTGCCGAAATCCTTTCCACTTTCGGAAATGCTTTTCAAACCACACAAGAGGCAACTGTCGCGGCTCTAGGAAAAGTAATTAAAGAGAATCAATCTCACGGCCCTAGCGGCTACTCATCAAAACCCCCTACATTTCATGGTGATGGTATCGATGATGTAGATCAATTGCTTGCATCATTTCAGCGTTATGCCGATTTCTTTTCATGGCCAACCGCAAAACGGATGAAAGCACTTCCTCTCAGTCTCACAGGTCATGCCAATATATGGTTTAATTCTCTTGATGAGGATGTTTATCACTCTTACGATGATCTAACACGCCTATTACGAGACCAATTTAATTCCCGCGCTTCACAATGGCTTTTGCGACAGGAATTAACACAACGGAAACAGAGATCGAATGAAGCAGTCGCTGATTTCTCAGCTGACATTCGCCGTCAGTGTCAGCGCTTACGTTTATCTAAACCCGAATGGATGCACATTTTCATTCAAGGGCTTAGAACGGAGATCCGCTCTCACATTGTATTACAACAACCTGACACATTTGAACAGGCTGAGCACATGGCTAAGCTCAAGGAAGCCGTGTTAAAGCCGGATCCCCAAGCTCAATTATCACCCAACGCCCTTGCCCAAGCTCTAATATCTCAATTACAAAAACCACAACCGGAAGCCCCAACTGTGGCTGCGTTTTCTGCCAACACCAGCCCTTTACCAAGCACAAATTTTTCATCTCCGCCCCAAAGGGAAATACCCCTTACTGAGTCTTCGGTGCGTGCCATTTTTCAACAAGAGCTCCGACAAGCATTTAGAAATAATCCTAACACAGCCCAAGGCTCATATCAGCGATCAGACTATCGCGACAACAGGCCTAATTATAATAACCGCAACGATAACCAATTCCGCAATAGACGCACGCCACAAGGATACCCCATTTGTAACACCTGTAATCGTCGCGGACACACTAATATGTATAATAATGATGATGTGTATTCTGAACCTTACACACCTTACCCTGAAAGGTGTGCACCTATAACGAATAATTCTCAGTCACCTAATGACTTGACCTCTCAACTTCTCGATGTCCTCTCCACGTTCTTTACTAATGGTTGCGCCGATGTCCCGAACGGTGTATACCAACCACCTCCAGATCCGCAAATTATAGACGATGAGAAATATCGTCCAATGGCGTCCAACACGGATGCACTGGTTGCTCAAGTACCACCAAGTATTAATGAAGAAGTCCAGCCCAATCAATCACGTTCAAAAGCCGTTCCCACCGCCACTGCATTAGGTGCAGACACAAAGGTCCTTAATATGACAAATCAGGACATTGATATTAGCAATGCACGTCAGCATTGTAGCAGACCCAACGAAGAGTCAATCCACGAGTTGATCACCGATCCAACCATAGAATTTCAGACGATTAATGATGATGCCACAGAAGTTAGTAGAAACAGTGTTCAGAGTAAACACTATATTTGTCCAGAACCAGATCGCCCAAATGCGACATCGAATGGACCTATTTTATCATCATCACTTGTAGAAAATGTCGATGACATTCGGCTAATTGCCGCACCCCATTCGGTTGATCACAATAACCCCGTCTATACGCTTAAAGACGGTGCTGACGTTACTATTGTTAATCTAATATCCAGTACTTGTAATGAGGAGACAGAATTGATTGATGAAGGGAACAGTGATTCCCCATTGGAAAATGCAGAGATGCCTAATCACTTAGTCGATAGAAATCGCAGTCAAGAGGCATGCAACCACAATAATGATAAGGACGATAAGGATGAAAATAATGATGAGGATTCTGATGAGGATATTAATGATGTTGAGAATCAGCTAAGTACCCGCAGTACGAATACATGTGAAAGCGGGTACCTAATAAGCGATAATACAGAACGTGAACCTGATAATCATGTGCATGTTAATAATGATTACGAGGTCCAAGAGGACTCTCAGGTAGAGTCTTGCGTTGCTCACGAACCTGAAATATTACCGCAATCAACAGCAGTAACACATGCGTTCGTGACAACAACACCTAATTTCTTGGAGttacctaacgtgagttttgagaatgtacaagaggtgacacccactgatcgccctcccccttgtaatcaggagatgcacagtgaagaggatctgcattttgttgcaagcattccactaatccaaaagtctaacaacctttatatacaggcagtactagaaggtctgccagtgctttgcttgattgacacgggtgcatcgataacaatcatcaaccacaacctttggcgtgattcacctgaactttctaaacttcccttaattacaccaagtaaggagttggttgctcggtcagttactggtgactctttacaagttctcggaaagcttgatgtcacgttccttcttcatgatggtatcttcccctttcaatcatatgtaatcaatgactctatgtacgatgttatccttggacgcgatttccttcaacgctttaaatccaggatcgatttccagaccgagacacttgaattaaccgcaccacctttagacctaaatggcatcctcccttccgatagcgaccaccaacaattagatttttgcgctgtatacagcccaaaatcgtgtgtcttaccacctcaatcagaaacgatacttcctgctacactgaaggatgaatcactaatcggttccattggcatatttgagccccatgtgggcctatcggagcggtatgagctctatggagccgccgaactagtaaaggtagccaaaactggcaccatccctgtgaggatactgaatcccacaggtagaccgatcaagattcatcgttccagcacacttggaaactttcaagcaaacgatagggatatcttagccgtaacccttgatgaggccgctgagttacctagtggacctaaactaccagcaaatgatttacatgacgtggtagatctatcttctgcagatcttgccgatcacgaaaaacagcgcctttttgagtttctacgcaattatcgtgatgtatttgcaaaaacgcccaaagaactaggacgcacagcggaagtcaaacacacgataggcactggtaattcatccccaatccgtctccgaccctaccggacgtcacccatccacagagaagagatagacaagcagatcaatgacatgttggaacaggacattatccagcaatctgttagtccctgggctgcccctgtagtcctagtaaagaaaaaggatggaacgacgagattttgtgttgattaccgccgtctaaacgaagttactaagaaagattcctatccgcttccaaggattgacgataccctagatgccttacaaggtgcaaagattttcaccacattggacttacgttcgggttattggcaaatcgaactccatcctgaagctatggagaagacagcctttatcacccatcgaggcttgtacgagttcaaagtcctaccttttggactctgtaattcaccgtctacgtttcagagactcatggaacatatcttacgaggactaaactggaaaacttgtctgatctatattgacgatatcatcatcttttcgcatgatttcgaggaacacctgaaacacttagaaactgtcttcatgcggttgcgtgaggccaatgttaagctcaaaccatcaaagtgtttcttcgccaggactcgtgtcgagtacctgggtcacgtggtgtctaaagatggtatctgcccagatccatcaaaggttgacgctgtcaatacgtttcctgcacccaggaacgtaaaacaggttcgcacattcttaggaatggcaaactattatcgccgcttcgtgaaagatttcgcgaagatggcttcccccttacatggactcaccaagaaggccgtcaccttccattggaactctgactgccaggatgcctttgataaactcaaacgagccttagtgtcggctccaatcttgtcattcccagacttctccctgacgttccagctttatgtcgatgccagtctagatggacttggcatggccctaggacaaatccaggacggccgtgaggtagccattgcctacgcaggacgcgatttgaataaagcagagcgtaactacagcgccacagagagagaggcccttgcagtcgttaccagaaatataagacatgttactcccgcgatattagatcagcggtctaccttcagtccgaaatactcttcgaaatttcaaccaaaataa

Transcript

alvinactis_v1_g18938

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03732	Retrotrans_gag	Retrotransposon gag protein	Family	Interproscan
PF09668	Asp_protease	Aspartyl protease	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR005162	Domain	Retrotransposon gag domain	Interproscan
IPR019103	Domain	Aspartic peptidase, DDI1-type	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR051320	Family	Viral Replication and Maturation Polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064	POL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-