Gene detail

Detailed information of alvinactis_v1_g18373 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g18373	REVERSE TRANSCRIPTASE	chr_9	11686960	11862096	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g18373

GCAGACTCTCAAAAGGTTCCATCTTTGAGACCTTTCACAGCTCCAGGAAAGCAGACATACCTTATTATAACACCCAAGTCACCGGAAAGATCAAATGCTCTATTTCCATCGCCAATGAGATCAAAAACAGCTGCAGGATTTCATCATGATCATTTAAGTCCTCCTTCAAGACCAAGATCTGGTTCAGGTTTCTCAGATTCTTCTGTTAGCTTATCAAGTACTCCTCGTTCAAATATTCCAAGGAAATCCAAACAGCCAAGAGGAGACAAAGGCCCCAGAAGTTTCCCCAGAATTAGAAGAACGTCAATCAGACAAAAGGTGCATATTGCATGGGATGATGTTGGTAAGAGACAAGCTGGTCAGCCAAGGCCTGATGATAAAACTAGTTTTACAGACAAAACAGAAGGATATGACAAAGGCAAGATACTATCTGTTGAATCACGAATTCGCGACAGAACCAAAATCACCACATATAAACCCATGTCTCTTGTTCCTGGATCCATTTCCACCATAATTGCTCTAGATGAATCTGAGGAAGATGAGGACAAAAGTGAAGAACCTGATAGTGCGAGTAGTGACATCAAAACCCTTATGTCACCGTGTTTTACTGATGTCCTTAGTTCTGATGGAAGCTCAGAGTATGAGACGGATTTGGAGGAGGAATTTCCAGTAAAACCCAAAGAATTTGATCCATCTGGGAAAACAGTTTATGTTAAGATGTGTAATGACAATGATCTGGTGCCAGTTTCATTTCTAACCAAGAGACTCGAAAGAAAAGAGATCATCATGAGACATCATGGACTGGGAACCGAGGGGACACTACCTATAGCTAAGTCTCTAAAGAAAAATACCTTTACTGAGAAACTTGATTTAACCGACAATTATATAGAAGGACCTGGAGCAGTGTCACTGGCTAATATGTTACAAGATAACTGCTTTATCACTGAAATaGATTTGTCCATGAATTTCATACGATCAGAAGGAGGAATTGCTTTTGCACGAATGCTGCATAAGAATCAGTCACTTAAGAAACTTGTTCTACGATCTAATCATCTGACAGACAAGGATGCCAAAGTTTTTGCTGAGGCTCTCAAAGAAAACCGAACCCTTGAATATCTTGATATTAGCCACAACGAGATAGGAGAATTGGGTGGCATCTACTTAGGAGCTGGTTTGGCAATAAATTATGGTCTCAAGCACTTTGATGTTAGTTGGAATTGCATTCGATTTAAAGGTGCTGTTGGCATGGCCCAAGCTCTCAAATCGAACGATTGCCTGACACATTTTAACATCTCCTGGAATGGCTTGTCTCTTCTTGGGTGTGTCGCACTCGGACGATTTCTTAAGAAGAACGAGGCGCTGGTCGAGCTGGATATTAGTAACAATAGAATTGGATTACTTGGGACACAAAAGCTAGCAGCAGGAATTACTGGACATCCTAATTTAAAAGTATTAAAGATCGGCAGAAACCCAATGGGTGATGTTGGTGTTGAATGTCTTCTTAACGTTGTCAAGTCTCACAATACTATTACGTTTCTCTCACTTGAGGACATTACTGTATCGCCAAAACTTTTTGATGAAATTAAAGCCCTTGAAGCAGAGCGATGTATGACAATTATAACTGGTGGTATTGGAGGCTATAAAAGACCAAAGGAAATGCCCCCTGGAATGCGCATACTGTTGACTTTCATCTCAGACAACCGGTTACGCCTGATTGACTGGTTTAACCAGTTTGACAAGGATCACAGCGGTGGAATTTCCAGTGAAGAGTTTCGTAAAGGACTTAAGGAAATTGGCCTCGTCATGACAACTCGTCAGCTTGACAGGTTGATCCAGTTTATTGATATTAACGATGATGGTGAGATTGAATACAGAGAGATAAAGGCCTCctttgagaagctttattggcggttagaaaccaacttggatcccgacaaaaaggatttgactgcagcgacccttaaatctatcgctctcaactacatccagcgaaaagggccgtcaccaccgaagtctctcctaagagccgccaatcaactaaaaaggagggatgacatagtcattgtaaaaccggataaaggaacaggtgtcgtcgtgatggacaagaatgactatgtgcgcttattaaagaaggcttctattgacaacgagaataaattccaaaccgtttctttggagagaccaaaacgaagagggagacccacaaagcactttcatccattgctagagaaagagaaggaattaaactcacttgttaagcagatcttaccacgacaaatcgtgaagcttgtttcttcaaacggtgcaagactcgcccatatatatggtctccccaagacgcacaaggttgagctagcaatgcgccccatattgtcagcaaccggaacgtacaacttcaagttggcaaaatggttagatgagaagctgaaacctctctctgttaatgaccataccatcacagatgtttttcagtttgcggaccatcttcatcaagcagagctcaatgtaggtgatacactggtctcctatgacgtgtgctcactctttaccaacgtcccgcttgatgagactatagatattttGGTGGATAAAGCATTTAAAGATAactggtttaacagcacatacgacctcgacatctcaaagaaggacctgaagcaacttctcttaatttctacaaagaaccagctattccaatttgagggaaacttgtatgagcaaacagaaggcgtcgccatgggatctccactagggcccctgatggccaacacctttatgtgcagcattgaagatcgcctgcctcaaatgggacaactgccatccttctacaatagatatgtagatgacaccctcgtcgccatgcccaacgtcgaggtagccttgtcttttttgaacaccctcaacactcttcatccatccctggagttcaccatggaaacagctcaagataacaagctgccattcctgggaatgttgattacaaaaactggatgccatttgtcgaccgaagtatacagaaaaccaactgatactggtttgttgcatcatttcaagagccacgttgacatagcctacaagcgagcattactaaaaacaatgctacatcgtgctttccgtctttcatcttcatggaagttatttagtgacgaatgtgatcgcctcaaaggaactttcaccaaactccagtatccagTCAGTCTATTCAACTCTGCGACTAACCGCTTCATTGAAGAACAAATCACCAGTAAGCCACTTAGCGAATCTGTGCCAAATAACGACAAGCCACCTATCAGGTTTGCAATCCCCTTCAAAGACCAAAAGTCGGCTGATATAGTACGAAATCAGCTACGTGACCTCAGCTTGAGGATTGGAATAAACATCTCGCCAGTCTATACAAGCAGCAAAATCAAGCAAGACCTCACAATCAAAGAACCCAAACCTTCTATTGTGAATCAACAGTGCGTCGTATATAACTTCAAGTGTGACTTGTGCGACACAAGTTATGTTGGCTATACATGCCGGCATTTATATCAGCGCATTGAGGAGCATAGATCAGGAGTGATTGGTCAACACATTGTGCAACATTGTGGGAAGCCCGCGGAGAATATCAATCACCTGTTTACCACCTTACGTCGAtgcaaagacagattcgagtgtctgatatttgagatgctgtttattcaagaacttcatccaaatcttaacaaacaatcagactcaattagagcgaaattgttcagtgctccccagtga

Transcript

alvinactis_v1_g18373

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000305	Domain	GIY-YIG endonuclease	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035901	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-