Gene detail

Detailed information of alvinactis_v1_g17640 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g17640	CADHERIN-23	chr_8	26326763	26360471	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g17640

atgtcatatcacagtgacagtgaattttactatcccgaaagggataaagaaaacgaaaacgctacaactacaactacaagaaacgacgacaacatatcacaagatatccaagagtttatcgaggaccaaagacccgagacaactaagaaaaaaaccgattatgacataggaatatggaaaaagttctgttcttcaaacaacgagaacagggaaatcgaggaaatgcctgctgttgagatggatgtcctgctctgtaggttcttcatgaacgtgaagaaaaaaaatggcggcgagtacgagccttcgtcactgacatcgatacacagaagtatccaaaggtatcttaacaacaagaactctcctttgaatttgtttaaagaccaggagttcaacaagtccagggaagttctcgtagcaaagaagcgtcagctagttgaaatccatgccaaaggtaatcgtcctcaagctgcaagaattatgaccgaagctgaagaggacttgttgtttgagaaagggcagtttggagaccataaccccgaagtacttcagagaaccatttgccttgataaagatccagaaactggaactgaaatcctagtttggagagctgagcgagggtccaaaacaagacacggagatggccaccaaagagctttcagtccaacagctcaccccacaaacaacgaacgatgtccagtaaagctgtacaaggccttcgcaagtcatcgacctgaagcgatgaaaaagccagattctccattctttttggcagtaaaccataagagaaaagaaggctcaggaatatggtattcaaacagccctttaggaaagaattccatcggaaaatttttggtgagtgctgctcaagccgttggtttgcctggcaatgtcggtaaccattccgttagaaaaacatgcatctcacgcctaatggacgctggcatccctgaaaactacgtagctcagctaagtggccataagaacctgaagagtcttgacgcctacaagtctgcatctacttcgcatcaacgacaaatgtcaatggttcttagtcgttcgtcaacatccaatgctacgaacacccaaagtacaagttctactcaggccatgagcacaacatcactctccgtacaaggtgaagaagatgtgataaaatctgcttgtggtggtgtattttcaagtgctaccatcgGTGATATCATAGTCGATTCCAGTCTTGACCGTGAGTTCAAAAGCTCTTACGTCTTAAACATCACCGCTGCAAACATCATTGGTAATATACCCGATGGATACACACAGGCCTATATAACCGTTACTGACGTCATTGATGCGCAGCCATACTTCAATACTAAAACATTAAGTGTATCAGCAGCAGAAAACGCGACTATTGGCACGACCGTTACCAAGGTGACGGCCTTGGACCAAGATGTTGGAGATACCTTAACTTATGCAATAGTTGGTGGTAACTTGTATGAGCAATTCATCATTGATAATGTGACAGGGGAAATTAGTACTGTTAAAGACCTTGACAGGGAAAATACGACAAAGTATTCGCTACAAGTACAAGCCAAGGATAGTATAGGGAAGTCTGATACGCTACAAGTTATTATTGATGTAACGGATGTTAACGACAACGCCCCTGTGTTTACATCACTAAGCTACGTCATAGACTACAGGGAACAGTCACCTAAAGACACCAGTATACTACGAGTTACAGCAAGTGATTCTGATGAGGGAATTAACGCTGAAATACGCTATAGTATTGTAGAGAATGTAACCGATCATGTGACTATTGATCCTGTCACGGGGATTGTGAGTCAAGGAACCAACGAACTTGACCGTGAGATTCAAGCTGTGTTTAACTTTACAGTCAAAGCAACAGACCAAGGGAACCCCCCACGGTCTTCCACTGTCCGGGTATCCCTGGAACTGATTGATATCAACGACCATAACCCAACGTTTGTCAATCAAACGTACTATGGATACGTGAAAGAGAATCAGCCGCCAGGGACGTCAGTTATCATGATAACAGCTACAGATGCCGATGCTGGTAAAAACGCAGAACTCACGTATGGATTGTCTGGATCGTTTGACTTTCAGATCAACGAGAAAACGGGTAATGTAACCACTCGAGAGGTATTAAATCGTGAAGTGACCGATAAATACACCCTTACGTTCCGTGCAGTCGACAATGCTGTGCGCGCGCGTGAAGGGACCACAACGCTTATTGTGAGAGTTCTTGACGACAATGACCACGCCCCTGTGTTTAGTAAAGATGTGTACGTATTTAAAGACCGTGTCACCGAGAATGTCCCCATTGGCTATTCTGTTGGTTACGTCACTGCGTCAGACAAAGATATCGACAACAATGCACGCATCACGTATTTCATCGCGTCTGGGAATAAAAATAATACATTTTCAGTCAATGAGACAACTGGAGAGATAACAACAGAATCAAAACTCGACCGAGAAACCAAGTCAAACTTTACCTTAACGATTACGGCAAAGGATCATGGGATACCACCTAAAGAGGCTAATGCAACTGTTACAATATTCATTAACGACTATAACGATAACACTCCTCAATTCACCCTGAACACATATAACGCTTCATTGAAGGAAAACGCAAAAAGTGACACCAAGGTGACGGTAGTAAGCGCGTCGGACGCTGATGAAGGTGTGAATGGTCAGTTTATCTACAAGATTGAATCAGGAGACGACGACAACGCCTTCTCATTGCACGAGAAAACAGGAGTCATGACTCTAAATGCCGGCAAGGATAAGCTATCGAATAAACTCGATCACGAGACTAAACCGTTGTTCAACATGACGATATCAGCGAAGGATGGCGGCAGCCCCTCCCTGACGGGATATACTTTTGTCGTCGTTACCGTCATTGATGTGGATGACAATGCGCCACAATTTGGCAAAGATGCATACACTGCAGCAGTTTATGAGAACATTACACAAGGAACTGTTGTGACTCAAGTGAACGCCACGGACATCGATACTGCGGTAGCGCAGACCATCTATTACCAGCTAGAAAGTGGTAATGTTGGCGATGTGTTTTACATTGGGCGATTGAACGGCACAGTCTCTTTGAAATGTGGCTCGGGATGTCTTGACCGTGAGACTAAGAACCAGTACGTTATGACAGTTGCTGCAATCAGTATTGTCAACCAGACGCAGCAAAAAACAACAGCAAAGTTAACAATCACTGTACTCGATATAAACGATGTCGCACCTATTTTCGATCCTCTGTCTTATGAGAAACTAGTAACAGAAGACGTGCAGGATATATCTGGTATTGATAACACAGTACTGACAGTATCAGCTAAAGACAACGACCTTGGCTCCAATGCTGAACTTAGATACTCTATAATACAAGGCAACGAAAAAGGATACTTTACGTTAAACAATAAAACTGGCAAACTCAGCAAAACAAAGCAATTAGATCGTGAAGAGACATCGTCATTCCTACTAGTTGTCCAGGCAACAGATTTAGGCGAACCTCCGCTGTCCAGTAATACTACTGTTCGTTTAACTATCGTGGATGTCAATGACAATCATCCTACATTCACGAAGGATGGAAATAATGAATTCCGTGTTATGGAGAATATCACGGTGGATACACTGATCACTCGTATCAACGCAACAGACAATGACACAGGGACTAACGCCATGGTAGAGTATGTCATCATTAGTGGTGATAGTAAAGGTGATTTCACACTCAACAAAACAAGTGGCGAACTGAAGACAGCAAAACCACTGGATCACGAAACTACAGCAGTTTATCAGATAATCGTACAAGCCAAGGATGGAGGAAGTCCTGTTCTAACGAGTCAGAAAGAAATCAAGATTATTGTGACTGACCTTAATGACAATAGACCGACATTCAAGCAGCACTCCATTACATTATCTGTGGGTGAAAATCTTCAGGCAGGCACTGAAGTAGGCGTAATAACAGCCAGTGATTTCGATGCGAGTGACTCAGTCTACTACTACATCGTCGGTGGCAGCGACTATTTCAAACTTAACGATACAACAGGAAAAATCAAGACTAAGAAAAAGTTGGATCGAGAAGACAAAGCAACCTACATTATAGATGTAAAAGCTTCAAATTACAAGTTGAATCCTTCGACACTGACACCAGTTAGAAAAAGAAGAAGTGTTTCAAATTCTAGTTCAGACCCATCCATTCAACGAGTCGTTATAAGCATTGGTGATCTAAACGACAATGGTCCAGTATTCAAGAAGAAGCTCTACACTGGAGGTGTTTCTGACAGCATCAAACATGATTCAAATGCTCTTCTTGTAACAgcttacgaccctgattctggcaataatagtcgcattgcttacagcatcgacactaacaggtttagcattgataaAGCGACTGGTTGGATCAAAACTGCCTCGTCGTTTGCTGGAGAGACTGGGAAAGAATATATCTTCACCGTCACAGCCAAGGATAATTTTGGAGAAGAACCATGCTCTAATGACACTGCGGTTGTTAAGATTTACATCTTGGTTGACAAGGAGCGAGCAGTGCTCATTTCAGGCAGATCACTAGAAGACGTGAGAGCAAACAAAGACGAGTTTAAACGAATTCTTGAAAACATCACTGGTTTTATCATTAACATCGAAGATATTAATTACTACCAAAACGAAAAAGGGGAATATGATAAAACCAAGACGGCTGTGTTATTCCATGCAGTAGACCCAAAGACCAACAAGATTGTTAACAGAGAGGAGCTCATAAAAAAAATTGACGAAAATTATTTGAAGCATAAAAAATTCTTCTTAGAATGGCAAATTAAAGAAATCAAGCAATACGTTCCTCCCAAGAAACCTGAAGACTTCCCTCTATGGCTAGTGTTAGCTGTAGGACTAGGAATCCTACtcatcatcatcatcgtcatcttcTGCTGTGTGATCTTGTTATTGCGAAATCGACAAAAGCGAAAACTAAGGGCTGCTACAGCAGCAAGCTATGGAGAGAGTACACACGTTTCGCGACGAAGTTCCATGTCAACTGTACCGAATACCAATCTACACAACGCCGAAGGGTCTAATCCGATCTGGGTCGATCCGTATCACAACTGGGGCATGGCAGACGACGATGAGAGCGATTTCCAAACTTTCAAGGCCAATGGTGATTTAGCTAACGGTGGCAATTATTACAGCGACATCAAGATTAAACCAAGTACTAACAACCCATTGTTTGAATCGCAGGAAACGTACATGAACCTGGATTTCGACAACAACGAATCGCCAGATATCGATCTCTCTATCATCGACCATATTTCCTTGAGTAGGAAGAGTAGCCGCAACCATACACCTTCTCCTGAACCATACGAGTCATCGCCTCCGTCTGAAAGAAACTATTATGAAAACGACAACAAGTACCAGGTCACCTCGATCTAA

Transcript

alvinactis_v1_g17640

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF12012	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR021893	Domain	Domain of unknown function DUF3504	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-