Gene detail

Detailed information of alvinactis_v1_g17532 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g17532	PROTEIN CBG26694	chr_8	24512564	24522163	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g17532

atgtgtgtgacgaagaaacgtgataattcaagagttcgacagacgaacgaagtgcaagcttcagttggggaggatagtgaaacagatgaggaatcagtattcatgtttcatgtaaattccaacacaagttctggatcaccgaacataccttactattcaatggatgtcaacataaatggtgtcacgggaagttcagtcaggcttctcaaaaagaaagattatttaaagttactggagcaagatttatctacactaaatcgcccaagtttgttgcttaaaagctacaccggagatgcaattacctgctatggagaaaaggagatgaaagttcgcgttggcgaccaggaaactttaataacgattcgtgtggtagatggacctggaccatcattgcttggaagagatttaatggcgaaagttacacttccatggaggaatattttcagtgttacaataacagcacaggatgtcatgaaagattatgcaagtttatttgatactactacgattggaaagcttgaaggagtgcaagtgtcattacatgttaacgaagagaaacccgtatttatgaaagcaagaactgtgccatttgcgatacgagagcaatatgaaaagtcattggatcagcttgaagcggatggcatcattgaaaaagtggaacactctgaatgggcatcacctactgttccaattgtaaaacctgatggtacacttcgaatttgtggagattactcaggaacgatcaacaaatgttctgttttggagcagtatccagtaccaagtttagaggaattattaagcaagcttcaaaatgggaaaaagttcactaaattggatctatctaaagcttatcaccagttggaattgacgcctggaaaaggcaaggttgaagctattcgtaaagcaaaggcaccgagcattgttaaagagttacagagtttcattggcatggcaaattacttacgtcaatttattcctaacttcgcagagttaatggtgccactgtattgttacggacctcgaagaagtgagcaagtcttgcgtcactatgacccgtgtgcaccgttaatatttcaagcagatgcttcctcagttggagtaggagctgtcatattacaacctgttgaaaatggaactttgaagccagttgcgtatgcttcaagaacacttacagatgcagagaagaagtacgctcaaattgaaagagaatctttggccataatatttggtgtggtcaaattccgccagtatttgttaggaagacacttcactctaatgacagatcacaagcctttagtaacattatgtggagagtacaagccaattccacaaatggcatcgtcaaggataaaacgatggtcattattgttagctgcttacgactacactattcagtatctacctggaaaagacaaccactgtgcagattacttatccagaaatccaattgaaggcaaacctacgtctgctgagaaggtaacagtaaccgttctttttactcaccacgatgagataataaaagctgatgttgtggctgcagaaacgaagaaggatccaattctaaaagccgttatgtacaacaccaagcatgggtggatggaagaaccaactcgagatttgattccatactacaacaagagattggaaatcaccaacgagaacgatatcttgatttggaatgatcgcgttgttataccttcttcactgagggaaatgttgctgaacgagcttcatacagagcatctaggaatcgtaaaaagtaaaatgttcttagtggtcgtagatgcatattcaaagtatctagacgtcatacctatgactactgcaaattcaagtaataccattgccgccctacgtcatttattcagccattttggattaccagaccacatagtaaccgataatggaacacaattcacaagttttgaatttcagaactttctacgtttaaatgacgtgtttcacaccaaaaccgcacctggacaccctgcgacgaacggactcgctgaacgatacgtgggacattttaagaagaagatttccaagatgaagaacattaacgactcacttcagagaaagcttgaaagatttttgttcacctaccgtaccacccctaccacacttgggaagtcaccagcagaacttctgatgaatcgacaaccaaagacccgatttgattttttacgaaggagccataatctgaagcaacaagtcaaggtatttcaaaataattcagatttttctaacaagttcaagcaaggtcaagcagtttttgctttgaattttggaaaagggcctaagtggttacccggcatcatactgaaagtggtaagtccaagaaactacgaaattcaagtctatgacactgtttggaaaagacatggcactcaactaagggatcgtttcattccacaaccattattaccgaggaaagaagatgaaagtttcttatttccagaagtcccgacgcagattaaacaaccagtgcatgtaccacttccagaaacaaggccagagccacaaatagctacatcacatggagaagttgaaaataacgccgaaccgctcaagaacaatgaagaacttcacaagaaagcaccggaaacatcaaGGTATGGCAGGATTATACTAGCCTTCATATCATTCTACTATATGCCATTTGATCCAATCAAGGCAGTTGTAACATATCTTATTAGTGGGCCAGTACTAGATGAATTTGATGGTCGTGCTGCAAGATACTTCAACCAATGCACAAAATTTGGTGCATTAATTGACATGTTGACAGACAGATGTGTTACTACAGGTTTATTAATGATGCTGTCAGTCTTTTATCCTTCCAACCTTTTACTCTTTCAATTCCTGGTCTGTCTGGACATCAGCAGTCATTGGATACACGTACAGACTGCTATGATGATAGGTTCCAGTCACAAGGCCATAGATCTCTCTGGGAACTACTTTCTTAGAATTTACTACAAAGAGGTTGTGCTGTCTATATTCTGTGCTGGAAATGAGCTTTTCTTCTGCATGTTGTATCTCATCCACTTTTCACCAGGACCAATCAGTAAGTACAAACTTACAGTCAAACTCCTATTTACTCCCCAttaa

Transcript

alvinactis_v1_g17532

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF01066	CDP-OH_P_transf	CDP-alcohol phosphatidyltransferase	Family	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000462	Family	CDP-alcohol phosphatidyltransferase	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043130	Homologous_superfamily	CDP-alcohol phosphatidyltransferase, transmembrane domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048254	Conserved_site	CDP-alcohol phosphatidyltransferase, conserved site	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008654	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016780	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-