Gene detail

Detailed information of alvinactis_v1_g17499 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g17499	UNCHARACTERIZED	chr_8	23958053	24013218	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g17499

ATGACAAACTCAAAGAAAGAAGGCAGCCCTCCAGCGAACGAAGAAGAAGAGTCATCAGTTTATGTTTTTGACCGCAGAGAAGGAAACAAGGCCGAACAGCGTGTAAAGCTTGGAGGCATTTTCAATTTTGCCGCCTTCAAGGAGAAAGTTTGTCAAACCCTCAAAATACCCGATAAAGTTGAATTTGTTTTGGTCAACACCAACAGACAGCAGATCGATGATAAATCATACGATGAGCTTATTGAAGAAAATGAAACCGTGTATTTGCTAAAGTCCATTGATCAAGAACTTACTGCTCCAACACAAGAACGTGTTGCATTTATTCCACATTATGACACCCTGGTTAAGAGTGGCATGTACGAGTACTATGCAAGCGAGGGACAGAATCCACTACCTTTTGCCTTCGCTGAGCTTATAGATAACGCCTTGGCTGCTACATCTGATAATGAAGAGAACAGGAAAGTGGAAGTTAGACTGATGTTTGACGACACTACAGGAAAACATGCTGTTTGTGTTGTTGACAATGGTGGTGGCATGACTCCACGGGAACTGAATAACTGGGCCATTTATAGGTTATCGAAATTTAACAGCAACAAGAAAGCTAAAAAGTCAGGAGGTCAAGCAGAGGTTGCACGTTCTCTAAACAGTGACATCTCTTATTTTGGTGTGGGCGGCAAGCAGGCTATCTTTTTTATTGGAAATGCTACAAGGATGATTACAAAAACTAAAGATTGTACTGATGTTCATGAACTGTGCATTTCCAAAGAAGAATTTGAAAGACGTGAGAAGAATAAAGAATCCATCTACAGTGGGACGATTAGAAACAGACGGCCAGGGGACGTAAGCCATGTTTGTCATGACGAGGAAAGCGTGTGCAAACTAATTAAAGAAGAAGTTAACAAGAAAAGTTTTACAGCGGTAGTCATAACAGGTGTATCTGTGCAACATAGTCACTACCTGAAGACCCAGTTCAACCAATGGTGCAAACAGCTATCGCATATCTATCACTATTATCTGCATGGTCCCAAGGGCAATGAATTGAATGCAAGCAGAACTGACTATGAATTCAAAAGTATTGACATCAATGTTGTTCTGGTTGAGAAGGGTAAACAACTCAAAGTCAAAGAGCTGCATACAGTTGACGATGACCTACAAACACAGTACATTCGAACATCAGCATCCACCTTTGATTTCCGTGCTCATGTGGAAAATGCAGGCTGTATAGAGGGAATGTTACGCTACCATCCCTTCTTGTATGATAAAGAGACTTACCCATTGAATGAAGGAGATGCAAAGCTAGCTGAGGAAATCAACACTGCTACAGCTGATGATCCAATGGACGTTATAGAGAAAGACAACCATGGACCAAGAGGATATAGGCCCATCTTTGAGTGTTATTGGAACGGCAGGCTGATCCCCTACACCTCTATTGATTCATTAGAGTGGTGTCAACTTCCAAAGAAAAGAACCATAATACCGCAAGAGTGTTATAATAGGTTTTCTGGTGTTCTTTGGACAAATGATGCCTTCCAAGTCAGCACTAATAAACTGACATTCATGGATCTTGAAGTAAAGCTAAAAGACAAGGCTACTACCTTCAATAGGGTAGTAACAGGGCAGGAACAGAGAGTGCAGATATCGAAAGCATTTCATGACTGGATAAAAGAATGTCATGAGAACCACGACAAGCAGATCAAGTTTTCTAGCTTCCAAGGTCAAGTAAAAAGGCCAGAACTGTCACAGAAAAGAAACCAAAGCCCCTGGTCAGTATTTCATGCCATCGAGTGGGATGGCAGAGTGTTCAAAGCTGGTCAACTGATAAGGACCATAAGGACCATCCCCCATTTCTGTGCTACAGTTAAAAGGTTCTTGTTGTTTGGGGACCATGATGGAGATGTGTTTGCTACAGGCGGCGAGATGGAAATAGTACAGGAACCAGTATCATTATTTGGGGAAATGAAAATCCTTCCATTAGCTAAACTAGACAGAACCTTGACGATTACACAAATCAAAAAGTTTGTTGAAGATGAGGAATGCAAACTACCAAGCCGCATAACAGTTGTCTGGCCTGAAGGAAATAAACTGGAAAATAATTCTAAAATACCTGCCGGCACAACTATTGGTGCAATGAAGGTAGATATAGTCAATGGTAAAGGTGAACCAATCAATAAGTTACCAGGAGATAGAAGAAAGTTGCTAGTGGAAATGAAAGTAATATGGCACGGTTCAGAAAAAGAAGGAGATAAAGTAATAACAAATCTTGTATGTCAACATGGTGGCAAGAATTGGCCGTACTGGTTCAGGAAAATGGAAAACATCACCCAGCTTGGTTCACACACACTATCATTACAAGTCATTGTAAGTGAGAGTTCTACTGTACCTGTTATGAAGGGCCTGCCATCTCATCGCTTCAAATTCACTGTCACTGAGGCTAAACCTGATAAGTTTTCGTTTGGTATGTTGGACAACCCACTACGCATTGGTGTACCCTTCCAAATTCCACTAAATCTATTTGATGAATTCAACAATCCATCCAAGTTTTGTGAAGAAGTTGGGCCTACTCTAAATGCAAGTGGCCTTGAGTTAAGTTACAGTGGGTTGTCGTCAAAGGCCAACTCTCTGATTATTAAAAATGTGGTTGCCGTGGGAACAATCCCTTCGCACGCCGGCAAGGATTTCAATCTCAAGGTGACTCTACCTGGTCTAGAGGAAGACACGCAGAGCTTAAAGATTAGGCTCCTCCCTGGTCCACCAGAAAAGTTAGTTGTAGCACCACCATCGTCAGAGATCACCATTGAGAATGGAGACCCATTAGACATTCATGTCCAAGTGCAGGACAAGGCTGGGAACATTACTGTCAGCCCAAGGCTTAACGTTGTGTGCAAGCTGAGTGGCCATCCAAATCTTCCCACATACTCTGCCGACTGTAGCTCGTCAGGAAAATGTGCCTTGACGGGCCCAAACATCTCTCTCCAACTCCCCAACCACAAAGCTGTGATAAAACTTAAGGCCAAGATCGAACTTCAACATCACAAGGAAGTGACTCCCATTGAGAAGACTATTATAGTGACACCAAGTAGAAAGGCTGGTCACATCCAGGTATTCTATCAGGCACCAGTGTCTAAACAAAAGATAAAGATAGAAGATGGACAGGATATACAGTGCGTTGCTGGACATACTATCTCTGGCTTGAGTATCAAGATACTAGATGAAGGGAACAGAGAGTTGACCATTGATCATTCACTAATGAACAAGTTAAAATTTAATTGGGTCCAGAAGGTTTCTAAAGACATGTTAAAACAAGGACTACTACCAGATGTCAAGACACCTACAACTGTTAGTGAGACAAAGTATTGTCAGGTCAATATGTTAGGCTCTGTTGGACTGGATTTCTCATTCACAATCAAACCAATACCTGATGAACCATACTTGCTAAAGTGCAGCTGCGTTAATCCTAAGCTAAGATTTGGTGAACCATTACAAGCTGACATTGTGGCTGTTGTTACTGACAGACATGGTAACAAGATAACTAAGCTGCCAACAGGAGCTCTCAAACTGTTACATGTGTCTGCAACAGGTCTAACGGAAAAAGAAGTTGGCGTAGGAGTTTCTCAGAATGGTTCTATAGTCATAAAGAATATTATGTTTGAAAAAGGACCACTTGGCTCTAAAGAACTCACTATAACATGGGAGAAACTCAAATGCTACCTTAGGCTAGAGGTTATTGCAGGCCCCCCAGCTAAGTTAGCACTTGTCAACATTGATACTACTGAGCCTATTTCTGCCTTCAACAATACTGCACTCTTGGTACCCCTGATTGTCCAGCTATGTGATGAGATGGGAAATGCTACGTGCGAAGCAGATGTCAAAGTGATCATGCTGACTGACAAGGGAATTAAGCTGACACCAAGTCCTGCTCAGCAAAAGACTAACACAAGAGGACAAGCTTCATTTGGACAACCAGTAGTTTCTGCAACAAGAGGTGTTTATGGCATTCGCATCAAGGCTTTATGTCCACCCAGGTCTACACTGGAAGCTCCTGTAATAAACATTAGGGTTCAGCCAGACCCATCCAAGCCTGTGCTTCTTAATGTCACATTTAACACCAAAGCTGCTTGTCAAGTAGGAGAATTACTACCAGTGGTTGCAGCACATGTCATTGCTGAAGACGAGACAGTTCTCAAGTCAGCTAGTGCTAAAGACTTGGTACTTAAGATATGGCATACTAGAGATGGACCACCCTCAGAGAAACCACCACCCAGGGCTACTACACTATACCCATCAAGAAAGGCAGCAGGAGACAAGGAGGGAATGTTCAGTTTTAgGGATCTCAAAGTACCTGATGTCTCTGGTCCTCATTGCATGGTTGTCCAGTATGGTCCTGGAGGATCTCTGTGCTTGACAAGTAAAATGATAACATTTACAGCGGATGCTGGTCCCCCAGTAAGACTAGAGCCAGAATCTGTACCACCAACTCCCACCGTGTCTAACACTAGTAGACTTACTGGCAGATACCTGGTCAGGACTCTAAGGTTGAATCTCAAGGATAAATTTGATAACAATGCCGGTGAAAATCTTCAAGGCAAAGTACTGATACGAATAACTAGTCCAATTGACGGCATTGATGAAATTCCCACGCTTGCAAATGCTTCGCGTCACAACCAAATTGAAGTCCCACTCGTTAAAGGCATGGCCATCGTTCAGAACTTGTATGTCCAAGAAAACACCAACGGCAAGGATGGACAAGAATATTTACTGAACTTTCAAGCTGTGTTAGGAGCAAGGGCAGTACCCCATCCAGTACCTCCCTTTACACTGGCTTTCCTCTTTTATAATGATGTACGTAAGCAGCAACAGATGGCCCAATTAACTAAAGAACGAGATCACTTGTTTGAGACTATTCGTACCTACAGATCATTGTTTGATACCACAAGACAGCTCATCCAAGAAATGAGAGTATCTGTTCATGAGGCTGCACAACAAGAACAAAAATTAAGAGGAGAACTAAAGAAACAGAATGTTACAGATCAACATTTACAATCAACACAAAGTGTAGATTCCTGCCTGACAGTTCTAGTCAAAAAGAGACAAGACATTTCTAAAGCACCTCGACGGCAATGTAGTTTAAATGCTGGACCAAGAGGAGATCCTGACATTCTGGGCAAGGTGGCTCATCTTGCACAAGTAAAAGATGATGATGTAGCTCGTGTGTTGTCATGGCACATGGCTAGTGATATGGACTGTGTAGTTACGCTCACCACAAGCAAGGCCAAAGAGGTGTATAATGAATCTAATGGTCAACAACAAGTCCTCCCTCTTGACTCCATATATAAACAGCGACTACCAGAATGGAACAGGCCGCTCCCTCACATTAGAAATGGAACTCGTAATTTTCAAGCAGCTGGTAACCCTATATATGCACGCGACAAGTTAATATTCCCTGGTGAGATGGACAACTGTAAAATAGTGTTTGGAATGCTGCTTGGTGATACCATCATTTTAGACGACTTGGATTGTGCTAATAAATACAGACATGAGGTTGTAAAGCAGACTCACTGTCCCACCATTTTAACACGAACAGGAGACAGAATTCGCAGCAATGGCAAGTTTGGTGGATTACAAAACAGAGCTCCGTTACTAGAGAGGATGCGAGGGGCAGTGTTTTCTGCACCAGTGTCTGCAAACTACAGTACACTCTCCACACAAATAGAACAATTGCAGGCCTATAAACAAGTACAGCTCAAGCACCAACAGGCCAAGTCTGATCTTGAGGTTCAACTACAGCAAGGCCAAACAGCAGAAATGAAAATAAAACACCGAGAATGCCACGATGCCGAGACCCAACTACGCATGATTGAAGAACGTCTTGGCATGACACCAACACAGTACGACATGCCTGCCAGCCCAGCAACAATGTTGCACACAGAGCTAAGTACTCCCCTGAGTAGAAGTACCATTGCTCTTAGACGAATACAAGGTACACCAAGTACTCCTGTTGTAAATGGCTCAGCAAGCCATAGCAGAACTAGGAGACCTTCTCCATTGAACTCTGAAGACCCTAAAGGCAGCAAGAGACCCAGGCGGGTGTGA

Transcript

alvinactis_v1_g17499

Protein

alvinactis_v1_g17499

MTNSKKEGSPPANEEEESSVYVFDRREGNKAEQRVKLGGIFNFAAFKEKVCQTLKIPDKVEFVLVNTNRQQIDDKSYDELIEENETVYLLKSIDQELTAPTQERVAFIPHYDTLVKSGMYEYYASEGQNPLPFAFAELIDNALAATSDNEENRKVEVRLMFDDTTGKHAVCVVDNGGGMTPRELNNWAIYRLSKFNSNKKAKKSGGQAEVARSLNSDISYFGVGGKQAIFFIGNATRMITKTKDCTDVHELCISKEEFERREKNKESIYSGTIRNRRPGDVSHVCHDEESVCKLIKEEVNKKSFTAVVITGVSVQHSHYLKTQFNQWCKQLSHIYHYYLHGPKGNELNASRTDYEFKSIDINVVLVEKGKQLKVKELHTVDDDLQTQYIRTSASTFDFRAHVENAGCIEGMLRYHPFLYDKETYPLNEGDAKLAEEINTATADDPMDVIEKDNHGPRGYRPIFECYWNGRLIPYTSIDSLEWCQLPKKRTIIPQECYNRFSGVLWTNDAFQVSTNKLTFMDLEVKLKDKATTFNRVVTGQEQRVQISKAFHDWIKECHENHDKQIKFSSFQGQVKRPELSQKRNQSPWSVFHAIEWDGRVFKAGQLIRTIRTIPHFCATVKRFLLFGDHDGDVFATGGEMEIVQEPVSLFGEMKILPLAKLDRTLTITQIKKFVEDEECKLPSRITVVWPEGNKLENNSKIPAGTTIGAMKVDIVNGKGEPINKLPGDRRKLLVEMKVIWHGSEKEGDKVITNLVCQHGGKNWPYWFRKMENITQLGSHTLSLQVIVSESSTVPVMKGLPSHRFKFTVTEAKPDKFSFGMLDNPLRIGVPFQIPLNLFDEFNNPSKFCEEVGPTLNASGLELSYSGLSSKANSLIIKNVVAVGTIPSHAGKDFNLKVTLPGLEEDTQSLKIRLLPGPPEKLVVAPPSSEITIENGDPLDIHVQVQDKAGNITVSPRLNVVCKLSGHPNLPTYSADCSSSGKCALTGPNISLQLPNHKAVIKLKAKIELQHHKEVTPIEKTIIVTPSRKAGHIQVFYQAPVSKQKIKIEDGQDIQCVAGHTISGLSIKILDEGNRELTIDHSLMNKLKFNWVQKVSKDMLKQGLLPDVKTPTTVSETKYCQVNMLGSVGLDFSFTIKPIPDEPYLLKCSCVNPKLRFGEPLQADIVAVVTDRHGNKITKLPTGALKLLHVSATGLTEKEVGVGVSQNGSIVIKNIMFEKGPLGSKELTITWEKLKCYLRLEVIAGPPAKLALVNIDTTEPISAFNNTALLVPLIVQLCDEMGNATCEADVKVIMLTDKGIKLTPSPAQQKTNTRGQASFGQPVVSATRGVYGIRIKALCPPRSTLEAPVINIRVQPDPSKPVLLNVTFNTKAACQVGELLPVVAAHVIAEDETVLKSASAKDLVLKIWHTRDGPPSEKPPPRATTLYPSRKAAGDKEGMFSFRDLKVPDVSGPHCMVVQYGPGGSLCLTSKMITFTADAGPPVRLEPESVPPTPTVSNTSRLTGRYLVRTLRLNLKDKFDNNAGENLQGKVLIRITSPIDGIDEIPTLANASRHNQIEVPLVKGMAIVQNLYVQENTNGKDGQEYLLNFQAVLGARAVPHPVPPFTLAFLFYNDVRKQQQMAQLTKERDHLFETIRTYRSLFDTTRQLIQEMRVSVHEAAQQEQKLRGELKKQNVTDQHLQSTQSVDSCLTVLVKKRQDISKAPRRQCSLNAGPRGDPDILGKVAHLAQVKDDDVARVLSWHMASDMDCVVTLTTSKAKEVYNESNGQQQVLPLDSIYKQRLPEWNRPLPHIRNGTRNFQAAGNPIYARDKLIFPGEMDNCKIVFGMLLGDTIILDDLDCANKYRHEVVKQTHCPTILTRTGDRIRSNGKFGGLQNRAPLLERMRGAVFSAPVSANYSTLSTQIEQLQAYKQVQLKHQQAKSDLEVQLQQGQTAEMKIKHRECHDAETQLRMIEERLGMTPTQYDMPASPATMLHTELSTPLSRSTIALRRIQGTPSTPVVNGSASHSRTRRPSPLNSEDPKGSKRPRRV*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF13589	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR038892	Family	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22640	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-