Gene detail

Detailed information of alvinactis_v1_g17441 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g17441	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	chr_8	23308981	23335517	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g17441

ATGTACGTAAGCAGGCAGACGGATATAGCTGCAAAGAAGAGACTTCATCCCCATAACTCTGTTCCTGGTTGCTGGAAGGCCAATAATTTATTTACATGGTTCATGCCAGATCTTGATGATGGATTGCAACAGGAGGGAACAAAAGTACacagcctgttgttgttcatgctgctgctgatgatgatgatgacaatgatgattgtgataatgatcaagtgtagtgattatgatgaagaaaatattgctgtcccatatcatttatatagtactgctgatgatagtgcatgcaatggtcatgatgatgaggacaatggagatgatggtgattgtgataatgatgaaGATCCTACACAATCTTCCAATGCCCTTGGATTAGTTGTGTCAAGATGTTATACTGGTGATGGTGAGCGACAATGGCACAGAGAATTTCCAAATGCAAATGCCACTAATCTATTAAACTGTGTACATAAGTCGTCATTGGCTTATGTATGGGGTGCTGGCGATGGAGGACAACTTGGCAGTGGTACCGTGGTTAATCACACTCCGTCACCGTTCCCAGTGGACGAAGAGGTTTCTCACATTGGGTGTGGACATGGTTTCACTGTGATATCAGAAAAGAAAGGAAGTAGACTGTGGATGTGTGGGGTTAATACGTCTTATCAATGTGGAAACAACTTTTCAGATGTGATATTGAGACCTTATGATGCAGCATTGCCTGTTCAAGATCCAGATACCAGTATAACAGAAATATCATGTGGCCGGTCACACACCATGATACTTACAGACAAAGAAGGAGtttttgctgttgGTGGAAACAGCCAAGGCCAATGTGGTATAGGAGATAAAACCATCAATCATCTAAGAGATTTTCAGAGAATACATTTGCCTGAGGAAAAAGAAAAAATTGTTAAGGTTGTTTGTGGTCTGGATCACAGTCTGTTTCTCACTGATTCTGGGAAAGTATTTGCTTGTGGATGGGGAGCTGATGGACAGACAGgacaaggccactatcaAGATGAACCGGGTATAAAACAAGTAAAGGGTGACCTTGATAGTGTCACGGTAAAGGACATTGCTTCATCAGCAGACTGCTGCTTGGCTATATCTGATGACGGAGAAGTGTTCTCATGGGGGAATTCAGAGTACAACCAGCTGGGATTACAAACTGAAGAACAACAGGTTTCTATAGCAACAAAGGCGCCACTTCTTTGTCAACTGGGTGTGGTCAAACACGTGGCTGCTGCGGGTTCATTCTCTATTATGATAACAGAAGAGGGCGTGGTCTATACGTGGGGGTATGGAGTACTGGGCTGCGGTCCTGACGTCACATCAAGTAAATCGCCACACAGGATAAAGACCCTGGAAAACTTGCACGAAGAAATTACCCAAGTGCACTGCGGTCTTGATCATGTTGCCATAGTTACAGTGAGTCGTGTTTCTGGTGGAGCATTTAATCCTCCAAAACGGCCAAACCATGGGTCAACAGGTCGCCAGATTTCTCTTTCTGCCAACTTTCTACCAGTAACACTGCCAGAGGGTGACATCCATCACTACGATGTATCAATCCATCCAGACAAATGCCCACGCAGAGTTAACCGTGATGTTGTCGAAATGATGGTCAAGAGCTATCACCAGATATTCAGAGATCTGAAGCCAGTCTTCGATGGTCGTAAGAATTTATACTGCCGAAAGGCATTGCCAATTGGAAAAAGGCCTACTGAATTTGAAGTGGTTTTACCATCAGAAAGCAATCAGGACAAGAAGTTTAAGGTTGCCATCAAATGGGTGTCTCAAGTCAGCATGTTTTCGCTCCAACAAGCCTTACAGGGGATGTGTAACCAAATACCATTTGAGACCATCCAAGCACTAGATGTCGTCTTACGACATTTGCCATCCATGAAGTATACCCCAGTGGGGAGATCTTTCTTCTCTCCCCCTGATAGGCAGAGTATTTCCCTAGAGGGTGGTAGAGAGGTGTGGTTTGGCTTTCATCAGAGTATCAGACCATCTCAGTGGAATATGATGCTTAATATTGATGTTTCTGCCACTGCGTTCTACAAGTGCCAGCCAGTCATTGACTTCCTAAAAGAGGTTCTGCGTAAAACTGATAATGACCTTGCAAGGGGTCAACCTCTTAGTGATTCAGACAGGCTTAGATTTACCAAGGAAATAAAAAGCTTAAAAGTTGAAATCAATTACTGTGGCACCATGAAAAGGAAGTACAGAGTGATTAATGTGACCAAGTTGCCTGCAAATGCGCTTCAGTTTTTACTTCAAGTAGAGGGAAGCCCAGGCAAACAGATCACAGTAGCAAAGTACTTTCAAGAGAAACATCACAAAAAATTAAGTTTTCCTCAACTGCCATGCTTACAAGTTGGTCAAGAAAAGAAACACACTTACCTACCAATCGAAGTGTGTAAGATTGTTGCTGGTCAGCGATGCGTCAAGAAACTATCAGACGGACAGACATCAAAGATGATTAGAGCTACAGCTCGGTCCGCTCCTGAGAGAAAGATAGAAATTAACGCACTGGTGCGAAAAGCAAACTTCGACGAAGATGAATATGTGAAAGACTTTGGTTTAAAGATTGGCAAGAAAATGGTGGAACTGAAAGGCCGTGTGCTGCCAGCTCCTAAGCTTATCTATGGTGGCGAAAGAGAAACACAGACTGTCACACCAAAGGGAGGTGTATGGAACATGCAAGGAAAGCAGATGTTTCACGGTATTGAGATTAGGACGTGGGCCATGGTGTGTTTTGCCGACCAGCGGCAATGCAATGAGGAAACGTTAAGGAAGTTTTCATCGATGTTGATAAAAGTCAGCGTGGATCAAGGGATGCCTATCAGGTCACAGCCATGCTTCTGTAAATTTGCAAGAAAGCCTGAAGAGGTAGAACCATTATTTAATCAACTCAAGCGAAACTATCCCGGTCTACAGCTTGTTGTTGTCGTTCTACCTGGTAAAACACCCGTGTACGCGGAAGTAAAGAAGGTCGGAGACACCATGGTAGGAATGGTTACCCAGTGCATACAGACACGAAACATCACCAAGGTGTCCACGCAGACCATCTCAAACTTGTGTCTGAAAATCAACGCCAAACTTGGTGGCATCAACAACATCTTGTCGCCTGATATCCGACCCCCTGTGTTTCGTGAACCCGTCATCTTTTTAGGTGCTGACGTCACTCACCCCGCCGCCGGCGACGAGAAGCGACCATCCATTGCTGCGGTCGTTGGCAGCATGGATGCACATCCGTGTCGGTACTACGCTTCAGTTCGCGTTCAAACACATCGTCAGGAGATCATCGCTGAGCTAGCGGCCATGGTCAAAGAACTTCTTCGACAATTTTATCACTGTACAATGCACAAACCTCACAGAATCATATTTTATCGAGATGGTGTCAGCGAAGGACAGTTTAAGCAAGTTCTTGTTCACGAATTAAGGGCCATTCGAGAAGCCTGCATTAGCCTAGAGGTCGGCTATCAACCAGGAATCACTTTTGTAGTTGTTCAAAAGCGCCACCACACAAGACTCTTTTGCCAAGATGAAAGAGACAAGTGTGGTAAGAGTGGTAATATTCCACCCGGTACCACTGTTGACCATGGCATCACACACCCTACAGAATTTGACTTCTATATCTGTAGTCATGCGGGTATTCAGGGTACCAGCCGTCCATCACACTACCATGTCCTTTGGGATGACAATAGATTCACCGCAGACGAGCTGCAAGCTCTGACCTACCAGTTATGTCACACGTATGTCCGCTGTACAAGGTCCGTCTCTATTCCTGCACCGGCCTATTATGCTCACTTGGTCGCTTTTAGAGCGCGCTTCCATATGATGGACCGGGATAAAGAAGGGAATGATAGTGGGTCGAGCAACAGTACGGGCGACGATTCAAGAACTCCCGAAACCCTAGCAAAAGCCGTTCAAGTACATCCCGATATTCTACGTGGAATGTATTTTGCCTGA

Transcript

alvinactis_v1_g17441

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF02171	Piwi	Piwi domain	Family	Interproscan
PF08699	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF13540	RCC1_2	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF16486	ArgoN	N-terminal domain of argonaute	Domain	Interproscan
PF16487	ArgoMid	Mid domain of argonaute	Domain	Interproscan
PF16488	ArgoL2	Argonaute linker 2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR003100	Domain	PAZ domain	Interproscan
IPR003165	Domain	Piwi domain	Interproscan
IPR009091	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014811	Domain	Argonaute, linker 1 domain	Interproscan
IPR032472	Domain	Argonaute linker 2 domain	Interproscan
IPR032473	Domain	Protein argonaute, Mid domain	Interproscan
IPR032474	Domain	Protein argonaute, N-terminal	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR045246	Domain	Argonaute-like, PIWI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016246	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198	Molecular Function	miRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-