Gene detail

Detailed information of alvinactis_v1_g15827 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g15827	MONOCARBOXYLATE TRANSPORTER	chr_7	27633426	27646926	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g15827

ATGTTTTACCACATATCCTTGGAACACGAGATTCTGCTTCATCCTCGCTACTTTGGTCCAAATTTACTTAACACAGTTAAACAGAAGCTCTTTACAGAAGTAGAGGGGACTTGTAGTGGGAAATATGGTTTCATTATCGCCGTCACGACTATAGATAATATTGGAGTAGGACATATACAACCTGGCAGAGGGTTTGTTGTGTATCCAGTTAAATATAAGGCCATTGTCTTTAGACCCTTCAAAGGAGAAGTCTTAGATGCCGTTATAACCCAAGTCAATAAGCTTGGGCTTTTCACAGAAATAGGACCTCTTTCATGTTTTGTATCAAGACATTCAATTCCTCCTGACATGGAGTTTGAACCCAACTCCAACCCTCCTTGCTATAAAACCAAAGAGGAGGATGTGGTGTACCAACAAGATGATGACATTAGATTAAGGATTGTAGGAACAAGAGTTGATGCAAATGACATTTTCGCTATTGGATCTCTAATGGATGATTATCTGGGGGGACCACACCCTCAAGATGGGCCATGGGCGTGGCTGGTTTTAGTTTGGTCAACATCATGTGCCTTGATGGTTGGTAGTATTTCTTTTGGTTATGGTGTTGTTCTACCAGTGCTTATGGAAGATCTACATGAAAACAGGGAGAGAACAGCCCTCGTTGGATCTCTCACATTTGGAGTCACCGTCTTCGCTTGTGTTTTCTTCTGCAAACTGTGCGAGTCCCACCCGTGTCGTATCATCGCTGGTCTTGGTGTAATCTCCTACGCTCTGGGTCTCATACTAAGTTCCTTGTGTAGATCGATTTATCTACTCTATCTTACTTACAGTGTTTTGGTTGGTCTCGGAGGCGCCGCTACGTTCGCTGCTAACTTCATTATTTTAAGGCATTACTTTAGAAGACATTATTCGCTAGCGATGGGGATTGTATACGGTGGTGCAGGGGTTGGAATGCTGTCTGTCGGTCCAGTCATGCAGGCCATGATAGAAAGCTTTGGATTGCAAAACTCTTTTCGCATTCTTGCAGGTGCCtttgtttttcttttgttatttgtcttcgttttGGACCCAAATGTCGAGAAGCATCACGAAGAAGTCACCGAGGAAGATCGTAAGGACACGTCGTCCATACCCAGGAGGATTGTGCTGGGATTCCTGGATTTGTCGGTGTGGAGATTCCCCGAGTACACGCTATGTGTTATTGCTATTTCGTTTGGTGTCTTTGGTCACTATACTGCGTTAATTCACATGGGTCAATACTCGGAAGAGTTGGGTACAAGTCCAAATAAAGCCTCTATATTATACGTATACCTTGGTATTGCATCCGTCATTTCAAGGCTGATATCTGGACGACTATGTGACGTCAGTGTCATTAAACCAAGATACGTCCAACAAGTAGGAGCCATCTTGTCTGGGGTGTCGACGATTCTCTTGAGTTTTGCCCAGACGTACACCCATCTTGTTATCTTTGCTGTATTCTATGGTCTCGCTGATGGAGCATTTCAAGTGACGTGTGGTGTTCTTTTTATGAATACTGTGGATCCACCACGTAGACCGTTAGCATTTGGACAGGCTAACATGGCTACAGCCGTGTCTAATGCAGCTGGTCCTGCATTAGCAGAaatgatgaagatggtggaacaatgcggtcagtttgtggaaatgacgatgataatgatgatgatgatagttggtggtgatgatgatgatggcggtgatgatggtggtgatgatggcggtgatgatggcgatgatgatgatggcggtgatgatgatgttgttgatggtggtggtgatggtgatggtggtagtggtagtggtggtggttgtgatgatggtggttgtgatgatggtggtgatgatgatgatggaatcaatgtgaggatgacgaAATTGAAATCTCATTCAAACTCACTCAATGCACTTACACGATATCGTCTTGAACAGAGGCTGGCAATGACAAACTTCAACTACGTACTCAGTGAAACACTGACCCATACACGCAAACACTGA

Transcript

alvinactis_v1_g15827

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF03876	SHS2_Rpb7-N	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Domain	Interproscan
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029	Domain	S1 domain	Interproscan
IPR005576	Domain	RNA polymerase Rpb7-like , N-terminal	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR036898	Homologous_superfamily	RNA polymerase Rpb7-like, N-terminal domain superfamily	Interproscan
IPR050327	Family	Proton-linked Monocarboxylate Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11360	MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0008028	Molecular Function	monocarboxylic acid transmembrane transporter activity	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-