Gene detail

Detailed information of alvinactis_v1_g150 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g150	CYTOKINE RECEPTOR	chr_1	2862330	2919523	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g150

atgcagtcaagttcacagatgtttggaagacgagcctgttctgttcgcttggccctagagcatgacgtcatgaggaaagtttcgccatctgacgtcattggatttttgcacagtgaggctgcatgtgatgagggggcaatcaagtgtgtccaagtggataaagatggatctattgtggtgacatttgcgtctcaaacatatgtcgagaagattttggatctggggacgcttacgattaatggcttcccggtggtggtatcgagcgtcgatgcgagacgacgatacgttaagatttattttctgccatacgaagttagcaatcaacaactgcaggcggcgctatcagagtatggccatgtgtatcatgtccgaagggactcgatttatgactttaaagagattgagagcggtgtgaggacagtcacaatgacagttaacaaggacgtcccaagtttcttgaaggtcatgggatgtgaagtgaagattttttaccgaggacagcggcaaacatgccgtaaatgtggcagcgagttccattttgcaaaagactgcccaaatacgcggtgctttaggtgccatggcttggggcatgtctcaagagaatgcgacatgttggagagatgtgaaagatgtggagaggaggccacacgagctggtcttgtaaggcggcgtttaaatttgccgcaccaagtccagtcgtgggttcattacagacaacagaagcggctcaagacatgcagcaaagccaacgcagttcgccgctgggttttgtcttggctctgccgagccagatatggaggcgatatcgggtacagcaaagcggccggcttcgccagtggcgagcccgaaaacaaagctcaagaagcacatggaggagatagaggcggtagtcaagaagagacgttagtttttattgaagtgttaggagtatcggatcatgatggtgttgtgttgtcattgaatcgtagtgtgggttgtaaaagcaaagggctgtggaaatttaataatgggttgttggaggatagtgagtttgtaaagagtatgagaaagtggataaggcaatatttagaacgaaacaagggggagagggcgagagagagaaggaagaaacgggataagataacaaatgagattataaggttgaaaaggggtttagctttaggggaggatgtggctgggaggattagtgaactgaatggggaactgaaagcggtagtgatgagagagagtgaaggggtgatgttggaagatgtagatgttgaggtacaagatgtattgttaggtaaattgtcagcagtgttgtcagatgagtcgtgtaacaattgtgaagggagagtaagagtggaggagctagagtatgcagtgaaaggaatggctaatgggaaaacaccgggagatgatgggctatcgttggaattttacaaatgttttagtgagttgttactacctgtagtgtgtcagctggcaaatgagagtttcgaagtagagagtttgcctgaggaatgtgtgcggagtgttgtgaggttggcgtttaagaagggagatcggaaagaactcaagaattggaggccgatctctcttcttaatttggattataagatagtctcaaaggctctgagtgttcgtttgaggagtgtcatgtcagaggttgtgtgtgaagaccagacgtgtggggtgatggggaggtcgattactgacaatttgaatgtgatgagagatgtactagatcatattgatcatactggggagggaggggtcattttgactttggatcaggaaaaagcgtttgataggggggaacgtaaagacttggtgatgtttgttgtggaatATATCGTCCCAGTGATCACCATAGCAACTGCCGCATCATCCCAGAGTATACAGATCACGTGGAAGATAAAACCAGACCAAGCAGTTGGTGACTCTATTAGTTACGTCATAACGTACACAGTACAGGGTGGAGGGTCGTACAGAGCAAACGTTGGTGGTGTTAAAACATACACAATCAGCTGGCTACAAAAGTATACATACTATACCATCACGGTGACAGTCATCAAAGATGGGAAGACTGGTTTAACGAGTCAAGCAaaaactgtacagacattggaagatgCTCCAGATTGTCCTCCAGGATCATTATCTACTCAGGTTACCTCGTCCACAAGTATCCGCGTTACCTGGAAACCACCTCCCAATACCAAGTGTAGGAATGGTGTTGTGAGAGGTTACAAAGTGGCTTACAAGAGAGTTGGAAGTACGATCAACTACCTTGAGGTGAAACATCCAAAAACTACAATCAATGTGACTGGTCTTCGTAAATACACTCAGTATGGTTTCCAAGTTTTAGCCTTTACCGTTAAGGACGGTCCACTGAGTAAACCAATGCGATGGGCAAAAACAAGCGAAGATGTGCCTGACGGATCTCCTCAACAACTGTCTTCCTCTAAAATCAACGCCACAACGTACAAAGTCACGTGGGGTGCTGTACCAAAAGACCTAGCAAATGGTGTCATAACAAAATATGAGCTGTTCTTCttgttgatcaaagattggccttctttgccaccatcgactagagtaagcattgatgatacaaacctggatgtttaccttcctttTTATGACAAGGTTTTCCTATGGCTTGACGAACTCAGCAATAGCCGTGCCGTTGGTGTTAACGATAAGTCCATCATACCAGACAAACAGATGACCGCTACATCGACGTATCGCAATTATTATCGTTATCAACCATATCAAGCAAGACTGCATGGCCAGTATGGATGGGGACCAGCAACCAGGAAAAACCCACGTGACTACCTACAGATCGACCTTGGTACTGCGCATGTCATCTGTGGTTTGGCAACACAAGGTTCTGCGGGATACAGTGAGTGGGTCACAGAATACAAACTGAATTTTGCTACAGATGCGTTAGTATGGAGAActtaccaagagggtagcaatgataagTTGTTTCAAGGTAACGTCAACACAAATACTGTAGTCAAACACGATCTAACCAACCCAGTAACAGCGAGATACATCAGATTTGTACCTACAAAGTATAACGTATGGAAAGCAATACGAGTTGAGGTGTACGTCTCGTCTCAAGTTGTGCCGATTACAAACTCAACAAGTTCAACACCAACAGTAAAGAATATCGTCCCAGCGATCACCATAGCAACTGCCACATCATCCCAGAGTATACATATCACGTGGAAGATACAACCAGACCAAGCAGTTGGTGACTCTATTAGTTACGTCATAACGTACACAGTACAGAGTGGAGGGTCGTACACACAAAACGTTGGTGGTGGTGTTAAAACATACACAATCACCAGGCTACAAAAGTATACACACTATACCATCACGGTGACAGTCATCAAAGATGGGAAGACTGGTTTAACGAGTCAAGCAaaaactgtacagacattggaagatgTACCACAGACATCTCCCCGTTATGTCATACTTACACCACGTTCATCACAGAGTATTCAAGTCAGCTGGACGCGTCCTGACCAACACCTCGTCAATGGACCGCTGACTGGTTACAGAATAACATACACAGCATATAGTGGTTCTACAAAGACAGTTGACGTGGGTGTGGTTACCACGTGGACACTGACGTCACTAGAAAAGTACACTTGGTACACAGTAACGATGGCAGTCAAGAACACCGATTACGTTGGTCCAAAAAGTACAAACATTGGCGTATGGACAaaggcagatggtaaaatgctaaagtatggttttatatcatggctctgttctgacattcacccaatagtaattgattatcttaaggcagatggtaaaatggtagagtatggttttatatcatggctctgttctgacattcacccaatagtgattgattatcttaagacagatggtaaaatggtaaagtatggatttaattcatggcgctgttctgacattcacccaatagtgattgattatcttaaggcagatggtaaaatggtagagtatggttttatatcatggctctgttctgacattcacccaatagtgattgattatcttaagacagatgCTCCAGATTGTCCTCCAGAATCATTATCTACTCAGGTTACCTCGTCCACAAGTATCCGCGTTACCTGGACACCACCTCCCAATATCAAGTGTAGGAATGGTGTTGTGAAAGGTTACAAGGTGGCTTACAAGAGAGTTGGAAGTACGATCAACTACCTTGAGGTGAAACATGCAAAAACTACAATCGATGTGACTGGTCTTCGTAAATACACTCAGTATGGTTTCCAAGTTTTAGCCTTTACCGTTAAGGACGGTCCACTGAGTAAACCAATGCGATGGGCAAAAACAAGCGAAGATGGTAAAGTATCACTTCATATAATGGCTCTGCCTCCAGATTGTCCTCCAGAATCATTATTTACTCAGGTTACCTCGTCCACAAGTATCCGCGTTACCTGGACACCACCTCCCAATACCAAGTGTAGGAATGGTGTTGTGAGAGGTTACAAGGTGGCATACAAGAGAGTTGGAAGTACGATCAACTACCTTGAGGTGAAACATCCAAAAACTACAATCGATGTGACTGGTCTTCGTAAATACACTCAGTATAGTTTCCAAGTTTTAGCCTTTACCGTTAAGAACGGTCCACTGAGTAAACCAATGCGATGGGCAAGAACAAGAGAAGATGGTAAAGTATCACTTTACATAATGGCTGTGCCTCCAGATTGTCCTCCAGAATCATTATCTACTCAGGTTACCTCGTCCACAAGTATCCGCGTTACCTGGACACCACCTCCCAATACCAAGTGTAGGAATGGTGTTGTGAGAGGTTACAAGGTGGCATACAAGAGAGTTGGAAGTACGATCAACTACCTTGAGGTGAAACATCCAAAAACTACAATCGATGTGACTGGTCTTCGTAAATACACTCAGTATAGTTTCCAAGTTTTAGCCTTTACCGTTAAGAACGGTCCACTGAGTAAACCAATGCGATGGGCAAGAACAAGAGAAGATGGTAAAGTATCACTTTACATAATGGCTGTGCCTCCAGATTGTCCTCCAGAATCATTATCTACTCAGGTTACCTCGTCCACAAGTATCCGCGTTACCTGGACACCACCTCCCAATATCAAGTGTAGGAATGGCATTGTGAGAAGTTACAAAGTGGCTTACAAGAGAGTTGGAAGTACGATCAACTACCTTGAGGTGAAACATCCAAAAACTACAATCGATGTGACTGGTCTTCGTAAATACACTCGGTATAGTTTCCAAGTTTTAGCCTTTACCGTTAAGGACGGTCCACTGAGTAAACCAATGCGATGGGCAAAAACAAGCGAAGATGTGCCTGACGGATCTCCTCAACAACTGTCTTCCTCTAAAATCAACGCTACAACGTACAAAGTCACGTGGGGTGCTGTACCAAAAGACCTAGCAAATGGTGTTATAACAAAATATGAGGTGAATCGCACACTTGTACGAGTAGGAAAGGACGCGATAAACAACGAAAATCATACATTTGTAGTAACGAGCAACTTCTTCCACCATGTCCTCCATGGTCTACAGTTGTGTGCAGAGTATAACGTATCTGTCAGGGCCTACACCAGTAAAGGATCAGGACCGTATAGCCAACCTGTCTCTATTATCACACAAAGACCTGGTCCACCACAAGGGTTAAAATTATCACAACAATCAAATGCAAAGACTGAAGTCACGCTTAACTGGGAGCCACCATTGGCTGTTGATTCAGTCGAGGATTACACAGTTGAATACAAAGGATCCAAGAGCTACTGGACAAGTTTTAGTGATACCAACAGCTATAAATCTAAAGTGAGAAAACTACTTATAGGCAATCTAGCACCTGACACGCGCTATGAATTCTGGTTGTATGCAACAACAGTTTGTGGTGACAGCCCAAATGTTAATGCAACGACTAACACCGACATAGACGTTCCCTTACCTGCTGACGTCACTACAGTTGAATATCATAACGACACAGACACAGTAGTCAACGTAACGCTGTGGAAGACGAGACAGCGTAATGGACCAATCAGtgcctatcaagtacttgtggtacgtGGTACCAACAAGCTATCGTCAAAGCATCAATGGTACAATCATACAACCGCTGTACAGAAAGGACTCCGTTATTACATCACGGCTGAAGTACCAGCTAAGTTTTTAGTGCAGAACAGAGTATTAACCATTGGTGATGGAACTGTCTATAAAGAAAAGTATACCAACGTGGCTTTGGACAAAGGACAACAATATCGCATATATCAACGAGCGACAACTGACTATCAGGGGAAAACCCTCAATGGAAAAGAAGCACTAGTGGCGTACATCAGAGTAGCTGGAGGCGAAACAGAGTCGAATGTCCAGAGAGTTGATTCCACAGGATCTGGTGGTGCAATTGGAGCTGTATTTGGTGTCCTCATCGTCTTGTGTATTGTGGTTGTTGGTGTCGTCTTCTGGAGACGTCGACGACAAGAGAATGGTGTAGACAAACAATTACAGCTTGAAGTGATGGCAGGTGTGGCTGTACAGGACGCGAACCCTGAAGCTGCTGGTAAGACTGAGTTAAAATAA

Transcript

alvinactis_v1_g150

Protein

alvinactis_v1_g150

MQSSSQMFGRRACSVRLALEHDVMRKVSPSDVIGFLHSEAACDEGAIKCVQVDKDGSIVVTFASQTYVEKILDLGTLTINGFPVVVSSVDARRRYVKIYFLPYEVSNQQLQAALSEYGHVYHVRRDSIYDFKEIESGVRTVTMTVNKDVPSFLKVMGCEVKIFYRGQRQTCRKCGSEFHFAKDCPNTRCFRCHGLGHVSRECDMLERCERCGEEATRAGLVRRRLNLPHQVQSWVHYRQQKRLKTCSKANAVRRWVLSWLCRARYGGDIGYSKAAGFASGEPENKAQEAHGGDRGGSQEETLVFIEVLGVSDHDGVVLSLNRSVGCKSKGLWKFNNGLLEDSEFVKSMRKWIRQYLERNKGERARERRKKRDKITNEIIRLKRGLALGEDVAGRISELNGELKAVVMRESEGVMLEDVDVEVQDVLLGKLSAVLSDESCNNCEGRVRVEELEYAVKGMANGKTPGDDGLSLEFYKCFSELLLPVVCQLANESFEVESLPEECVRSVVRLAFKKGDRKELKNWRPISLLNLDYKIVSKALSVRLRSVMSEVVCEDQTCGVMGRSITDNLNVMRDVLDHIDHTGEGGVILTLDQEKAFDRGERKDLVMFVVEYIVPVITIATAASSQSIQITWKIKPDQAVGDSISYVITYTVQGGGSYRANVGGVKTYTISWLQKYTYYTITVTVIKDGKTGLTSQAKTVQTLEDAPDCPPGSLSTQVTSSTSIRVTWKPPPNTKCRNGVVRGYKVAYKRVGSTINYLEVKHPKTTINVTGLRKYTQYGFQVLAFTVKDGPLSKPMRWAKTSEDVPDGSPQQLSSSKINATTYKVTWGAVPKDLANGVITKYELFFLLIKDWPSLPPSTRVSIDDTNLDVYLPFYDKVFLWLDELSNSRAVGVNDKSIIPDKQMTATSTYRNYYRYQPYQARLHGQYGWGPATRKNPRDYLQIDLGTAHVICGLATQGSAGYSEWVTEYKLNFATDALVWRTYQEGSNDKLFQGNVNTNTVVKHDLTNPVTARYIRFVPTKYNVWKAIRVEVYVSSQVVPITNSTSSTPTVKNIVPAITIATATSSQSIHITWKIQPDQAVGDSISYVITYTVQSGGSYTQNVGGGVKTYTITRLQKYTHYTITVTVIKDGKTGLTSQAKTVQTLEDVPQTSPRYVILTPRSSQSIQVSWTRPDQHLVNGPLTGYRITYTAYSGSTKTVDVGVVTTWTLTSLEKYTWYTVTMAVKNTDYVGPKSTNIGVWTKADGKMLKYGFISWLCSDIHPIVIDYLKADGKMVEYGFISWLCSDIHPIVIDYLKTDGKMVKYGFNSWRCSDIHPIVIDYLKADGKMVEYGFISWLCSDIHPIVIDYLKTDAPDCPPESLSTQVTSSTSIRVTWTPPPNIKCRNGVVKGYKVAYKRVGSTINYLEVKHAKTTIDVTGLRKYTQYGFQVLAFTVKDGPLSKPMRWAKTSEDGKVSLHIMALPPDCPPESLFTQVTSSTSIRVTWTPPPNTKCRNGVVRGYKVAYKRVGSTINYLEVKHPKTTIDVTGLRKYTQYSFQVLAFTVKNGPLSKPMRWARTREDGKVSLYIMAVPPDCPPESLSTQVTSSTSIRVTWTPPPNTKCRNGVVRGYKVAYKRVGSTINYLEVKHPKTTIDVTGLRKYTQYSFQVLAFTVKNGPLSKPMRWARTREDGKVSLYIMAVPPDCPPESLSTQVTSSTSIRVTWTPPPNIKCRNGIVRSYKVAYKRVGSTINYLEVKHPKTTIDVTGLRKYTRYSFQVLAFTVKDGPLSKPMRWAKTSEDVPDGSPQQLSSSKINATTYKVTWGAVPKDLANGVITKYEVNRTLVRVGKDAINNENHTFVVTSNFFHHVLHGLQLCAEYNVSVRAYTSKGSGPYSQPVSIITQRPGPPQGLKLSQQSNAKTEVTLNWEPPLAVDSVEDYTVEYKGSKSYWTSFSDTNSYKSKVRKLLIGNLAPDTRYEFWLYATTVCGDSPNVNATTNTDIDVPLPADVTTVEYHNDTDTVVNVTLWKTRQRNGPISAYQVLVVRGTNKLSSKHQWYNHTTAVQKGLRYYITAEVPAKFLVQNRVLTIGDGTVYKEKYTNVALDKGQQYRIYQRATTDYQGKTLNGKEALVAYIRVAGGETESNVQRVDSTGSGGAIGAVFGVLIVLCIVVVGVVFWRRRRQENGVDKQLQLEVMAGVAVQDANPEAAGKTELK*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:1990264	Biological Process	peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-