Gene detail

Detailed information of alvinactis_v1_g14768 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g14768	TETRATRICOPEPTIDE-LIKE HELICAL	chr_7	13274307	13353952	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g14768

ATGTCTAGCGACGAGGAATACACATCCATGCAAGAAACAGACAAGGAGAAAGTCGAAGTGCTACGAAAGAAGGCCACGACGTTAACTGGGCCGCATGGAGGGCTGCTACTAGACCTAAATAATGACACGTACGATGAATTTCCAACAGCCGTTTTAGAACTAAGTGATCTTCGAGAACTACATCTGTGCATCAGCAACTTATCGTCAATTCCCAGTTCAATAGATTGTCTGCATCATCTCTTGGTCTTGAAGCTACGGCAAAATGACTTCAGTGTGTTTCCAGAGGCGCTCTGTGGACTGGGTGGCCTTGAAGTCCTCGACTTATCAGAAAACAAGATATCTTCCGTACCGGAGGACATTAAACAGTTAACAAAGTTAAAAACACTTTTTCTTCAGAGCAACAAGTTGGAAGGAGAATTAAGTGAGAACATTTCGACTTTAACATCTCTTGTCAACTTAAACGTGTCAAAAAACGCACTCACTTCAATTCCAGGTTGTTTTGCGAAACTTACCGAGCTTCAACGTTTAATAATGTTGGAAAATTCATTAACAGAAGCACCCACAGTCCTGGCCAGTCTTACCAAGCTGAAATCTCTTGATATTTCTTATAACGATCTGGGAGAATTCAACCTGGACATCTCAGCTCTTCGACAACTCGAGAATCTGGATCTGGAATCGACCAAAATTTCTGTGCTTAATGATGTCATTTGCACACTGACCAGCCTGAAGCGACTAGACCTTGGACGAAACTGCATTGAATCACTTCCCGACGGTTTTCAAAATCTATCAAATCTGAAAGCACTCTGGCTCAACGATAATAAGTTTACAAGCTTTCCTGTTGGCATTTGCAAGCTACGATCGTTAGAAACCCTGAGCATCTCCTTTAACAAGATCCACAATTTGCCAAATGCGATTGCATATTTAGATAACCTGAAGTTGTTGGAATTAGACGATTGTGGGCTGGTGGGAATGATGCCTCTATCGATCTGCATGCTCAGAAGTTTAAAGTGGCTCTCACTCGGACAAAACAACCTCACAAAGCTCCCAGCCGTTCTTCGAACTTCTCTTCAAAATCTTACGGTCATCAATCTGGCCAACAACGACAACTTGCAAATGCCACCGGTGTCCGTGTACAAAAGAGGTATCAAAGCAATATTCAACTACATAGATGAAAGTGAAACCAAAAAGACAATCTATCAGAAACTTGTCTTTTTAGGGAATGTACAGGCTGGCAAGTCTAGTTTGACGAAGACCATGATCCAAGGTTCGTCACATCTCAGCGAAGACTCAGAAAGGACGATTGTGTTGGACAAAATCTTGTGGACACCCGAAGAAAACTTGAGCCTTCAGGTGTATGACTTTGGTGGCAGTGAGTGGTATTGTGTTGTCCAGCACTTTTTCCTTGAGAAGAATTCACTTGTCTGTTTGGTGATCAGCCTGACTGACTACACCGAAGAGACGTACATCGACTGTGTTGAGAAGTGGTTGAAGATCATTCAAGCAAGAGCTCCTGGAGCAAATCTCTTCGTTGTTACGACTCACACGGATGAAGTTCCTTCCCAAGAAGTGCTCACCAAGAAAAGCAGCATCCTGGAACTGATGCATACAAGGGAACAACTCGAAGTCAGCCATATCAACGAGGAAATTACCAGGCTGCAAACTCTCGCAAACATTGATCAACTGAAAGGCCATCTTTTGAAAACAGCAAAAGAGGTCGGTGGTATCATCCCCACATCCTGGCTTCGATTAAAATGTTCCAATTGTTCCAACGTGTTTGAAACGGGAATAACTTCAAAGTCCCTTGAACGTGCCAAAGAAGACTTGCGCCTCAAAGGAATCATGTCAGTTGAGCTTCTAAAGGGAATGCTGGACCACTTGAAGCTCAATGACAAGCTGATCGATGCCATCGTACAGCTTTTGATCCACTTTGGCTTGTGCTTTAAAGAAGAAGTCCGATACAACAGAATTACAAAACTGCACTTTCCTTGGTTCCTGAGTGAGTCAGCGCCGCCAGACGCCTCGTCGATGCTAATGCAACCACCAGAATCCAATTGTTGGCGATTCATTTTGGAATACAACTTCCCTCTTGGAAGTCCTCGAGCTCTTTTCGAAACTGCGTCCGTCCATATCCATCGTGTTGTGCATGACGAAATGAGCATCAAGCACTGGAAAGACGGCGTGCATGCACGGCTGCAACACAGCAAGATTCTATTACATCGGTCAGAAACCTGTGGAACTGAGACCATTAGCTTTCATGTTGAGGGAAAGGACATCAACGAATTGTGGAAAATCCTTACACAGCTACACACGTTGTTTAGTAACCTGTTGGACTGCTGGCCAGGAGTCTTGCTTGAAATGTGGCTTGTCTGTCCTCACTGCACGAGAAACGATGTCAAGAATCCTTACCGATTCAAAGGGGAAAATGTCGAGAAGTGCTGCCCAGAAAACGAGGACCACGTCACGTGCCCAAACGATGAAAGAGGTGGTAGTATACCAGTGAACTTGATCTATCCAATGCAAGCATCTGCATCGGCAAACGTTGTCACTCAAGACGAAATTTCCAAAGTCGCCTACATGATTGGGAGCGAATGGCGCTCGCTCGGTCGAGCACTGGGGCTGGACGAGTATGTGTTAGATCACATTGATTACGACAATCGGCAAGTTCAAGAGAAAGCATGTCAAATGATGCTAACATTCGGAGTATGGGACAGCCTTCCGCTAACCTTAAGCCAAGCCAAGAAAGAAGGATGGACAATAGATGCAAGCTGTCGAGGTTCACCAAACTTTTTTAAAGGCTATCGCTATGTGAAGGACAATGACAAGACGACAAGACTTTTGTATGACTGTCATGGACGCGTTGCTGGGATACAGGCCACGATAACACCACCACCATCTTATCCAACAAAATTCAACTCTGAGCCCTGGCACAAAAACCCTGACGGCACCATCAGTGCCACAGCATACTTTCGAGATCCGCAACATATCTGCACATGCAGAAAGCACTGCAATAAACCTCATGTGTCCCCAAAGTTAGTGGGTGACCGTCTTTGGATTCAACTGGGTGACGTAGGAAGAAAGCATTTCATGAAACTTCCACTTCATGCCAAGGATATGGTCACTACACCATGGGTAGAAGGCAACTGCTTCCCGGCAATGGGTGTGCATTACCACTACAACGTGTCCAAGTCTTTTGACTGCAATTATGCACTGCCAGTATTTCTCATTACTAGCGCACAAACAGGAGATGTCCATGGCTTTGGATGGGGTGTACCATTTAAGGTTGACAACAAGAGATGGGAGCATCCACATCCGTCACTCTTTGCGAGATCAATCAAGGCAGCTAATATCCCTGACTGTATCAAGAATTACAAGAGTATTTCTGTTCAGCATGTTTACTTTAACATCTCAGTCAACCTATCGTTTCTTTGCATGATCATTTTCAAAGAGTCCAGCCTGATATACAGTACAGAGAGCTCTGAACTAGAAGGAGTATTGTTTCCTAGCATTGGCTCGGTGCCACAACAGATAAAACATGATGCCAACCTAGACTGGCTCACAAATCAAAGTTACCAGGCAACTCACGAACATGATAATTGGCAGAGAAAGCTATCAGTTCAAGTATCTGATGAAGAGCAGGCCGCTGTCAGAGGTGTAAGACATTACAGCGTTAGCAGTGACAGCGACGAGGAAGACCACCAGCAAAAGAAAGCGAAAAAACACAGGAAAAGCGAGCTGAAGAAGAATAAGCCAGATACTATCTGGATTGAAGAATCTGGATTAGCACCTGAGGAAGCATACCGAGTATATCGAAAGCCAGATGTCCAAAATCTAATTTATGGATCTCTGTATAGGCTTGATTCGAGAGTCTCCACATTTACATTCAGGAAGGTTCAGAAGGCCTACGACAAGTGTTTCACTACGTTGTTGTCAATCAAAGAAGGTACATTTGTGTCTCATCAAGCTGAAGCAGGCATCGAGGAAGAAATGCTTGACCTGTTTGTGCAGCAGTGTAACTTTATGAAGCAATCAGGTCACATGGAGAAGTCTGTGGCTAGTTTCCAGGCCATGATTGAGCTCAACTGTCTGTGTCCCGATGAATTGAGTACCAACACACTGTCTGCAGGACTGACTGCTTTTCTGGAAACATTTTGGGATAGTGGACAACCAAGGTTTGGTGAAAGTGGAGCATTAGGGTGGAAAACCTGGATGGACAAAACTACCACTGACAAGAAACCCCTAGCACTAGAAAGTCTAGATTTCAAAAAGATCTTCAAATCCTGTCATCCTTCGCATGACAACGAAACTGAAGATACGGCCGAGAAAGAAGAAGAGCTGATCAAAGGATTGCACAAGTGGGAGGCATGGCTTAAGGTTGAAGTGTCCAGAGAGCAAACACAACTGAAACCATGGCAACCAGATCAAGCAACGGGCGAAACCGAAGACGACTGCGAGGACCCCGAAAGGATTATAATTTTTGACGACATAAGTTCAAGCCCTTTTAAACTCTGTAATCCCCCAAACAAGTTCAAACTCATCTTATGCTTCCTTGAAATGCTTGGTGTTCCCTCGCGTCCATTGTCATCCAGTCAGAGTTCTGATATCCACAGGTACTTTGAGCTCTCAGTCGAGTCTCTACAGCAGGTTCTGAATCAGTCTGACTTTAATGTCCATGGAATTGGCTGGCAAAGATATGGCTATTGGTATAACACTCGGGACAAAACAAGAATGAAGCCTTCATTTGAGACTTTGCAACTGGTACGAAACATCTTTGTGCAGTCCATCTCTCTTTTTGAGGGCGATTCCAAGAATTATCTAATAACTACATGGTTGCAATATGAGTTTTATTTGACCCAGCTGGAGAGTCTAAGGAAAGCCAGAAAACAAAAGCTTAAAGAGGTGTACAAACTGGCAAAGGCCATCCTAAAGGAACCCAGTAATAGGAATAACTTTCAGGTCTGGGAGGTCTTTGCTCAGATTACAGCTCTATCAGGGGACACTTTAGAAGCTCGTCACATGTTTGACTCAACCTTGTCATTGGGTAGTCAGTTGGCAGTCAATGATGCAAACAAAAGGATCACTTTGGCACCTCTGTACAGATCTTGTGCTGAAATGGAGCTCAAACAAGCAATGGAGTCCAACAAATCAAGCCCAGTAAACCATAACAGATTGCTTCATCTACTGGTCAGCTTTGCTGAGAATAACCAGTATGAACCAGCCATGGAGAGTATTATTGCAAATGGAGTCTCCTCTGCTAAGATCCTTAGAGCCAAGAGAACTTATAGTGAACTTTGTCACGACTCTATTCGGCAACTGAATGACTGTCCTTCAGAAGACAACAAGAAAGTCTTGTCATGTGTCCATTGCATTGTTTGCTGTGCCTTGTTTGCGTATGTGTCGTCAGGTATCCAAGCTGCAGTAGCTGTTTACGAGCAAGTATTGTCATCATTATCATCTCCAGATGATTCACTTCATCATGAACACCTGTGGACAAGCTATTTCTGTCTGCTGAAGATGCACACCAAGCAAGAGACAATGTCTCTTAGAACTGTCAAACAAGCCATTCACAGGGCAATCAGCATTTTCCCCAACAACCCCTTCTTTCTGGATTACTACCACCAAGTAGAACTAAAGTCCAACCTCACAGGGGAGGTGAGAAGGTTTTTTGATCACCTGACACACAGTGCTACAACTCCAATACCATGGATTTATGCCATTCATTATGAAGACATGAGAGCAAAAGCTACGTTGTCGGCAATAGATTGCAGTGATTATAGGGTGTCTGCTGGAGACGGACAGTCAGCTGGTCTTGTCACATCACTACCCACCACTGGTATTAGTCATCGGCAGAGAGCCTTGTTTGACAGGGCTACGTCAAGTGTTGCTGGACGGCAGTGCATTGGTTTATGGAGAATGTACATGGAGTTTGAGTTAAACCAAGGAAACCAAGAACAGGCCAAAGCTGTATTTTATCAAGCATTGCAGAACTGTGCATGGGCAAAGACACTTTACCTAGATGCAATAAAGGCCTTCCCTGATGACCTGCAGAACACAGTGGATATGATGGAAGAGAAGGAGCTGAGAGTACGAACACCACTAGAAGAGATTGACATTCTGATGGAAGAATttagtggtcaggcctggttgcacgaaagacctaaaactatagaatgtctcaccacgtcagaagctgattggctaatatccacgacagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccacgacagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccacgacagaagctgattggctaatatccaccacatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccacgacagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccacgacagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccaccgcatcagaagctgattggctaatatccacgacagaagtatacgaatacattaaaggtggtcacagtttttaa

Transcript

alvinactis_v1_g14768

Protein

alvinactis_v1_g14768

MSSDEEYTSMQETDKEKVEVLRKKATTLTGPHGGLLLDLNNDTYDEFPTAVLELSDLRELHLCISNLSSIPSSIDCLHHLLVLKLRQNDFSVFPEALCGLGGLEVLDLSENKISSVPEDIKQLTKLKTLFLQSNKLEGELSENISTLTSLVNLNVSKNALTSIPGCFAKLTELQRLIMLENSLTEAPTVLASLTKLKSLDISYNDLGEFNLDISALRQLENLDLESTKISVLNDVICTLTSLKRLDLGRNCIESLPDGFQNLSNLKALWLNDNKFTSFPVGICKLRSLETLSISFNKIHNLPNAIAYLDNLKLLELDDCGLVGMMPLSICMLRSLKWLSLGQNNLTKLPAVLRTSLQNLTVINLANNDNLQMPPVSVYKRGIKAIFNYIDESETKKTIYQKLVFLGNVQAGKSSLTKTMIQGSSHLSEDSERTIVLDKILWTPEENLSLQVYDFGGSEWYCVVQHFFLEKNSLVCLVISLTDYTEETYIDCVEKWLKIIQARAPGANLFVVTTHTDEVPSQEVLTKKSSILELMHTREQLEVSHINEEITRLQTLANIDQLKGHLLKTAKEVGGIIPTSWLRLKCSNCSNVFETGITSKSLERAKEDLRLKGIMSVELLKGMLDHLKLNDKLIDAIVQLLIHFGLCFKEEVRYNRITKLHFPWFLSESAPPDASSMLMQPPESNCWRFILEYNFPLGSPRALFETASVHIHRVVHDEMSIKHWKDGVHARLQHSKILLHRSETCGTETISFHVEGKDINELWKILTQLHTLFSNLLDCWPGVLLEMWLVCPHCTRNDVKNPYRFKGENVEKCCPENEDHVTCPNDERGGSIPVNLIYPMQASASANVVTQDEISKVAYMIGSEWRSLGRALGLDEYVLDHIDYDNRQVQEKACQMMLTFGVWDSLPLTLSQAKKEGWTIDASCRGSPNFFKGYRYVKDNDKTTRLLYDCHGRVAGIQATITPPPSYPTKFNSEPWHKNPDGTISATAYFRDPQHICTCRKHCNKPHVSPKLVGDRLWIQLGDVGRKHFMKLPLHAKDMVTTPWVEGNCFPAMGVHYHYNVSKSFDCNYALPVFLITSAQTGDVHGFGWGVPFKVDNKRWEHPHPSLFARSIKAANIPDCIKNYKSISVQHVYFNISVNLSFLCMIIFKESSLIYSTESSELEGVLFPSIGSVPQQIKHDANLDWLTNQSYQATHEHDNWQRKLSVQVSDEEQAAVRGVRHYSVSSDSDEEDHQQKKAKKHRKSELKKNKPDTIWIEESGLAPEEAYRVYRKPDVQNLIYGSLYRLDSRVSTFTFRKVQKAYDKCFTTLLSIKEGTFVSHQAEAGIEEEMLDLFVQQCNFMKQSGHMEKSVASFQAMIELNCLCPDELSTNTLSAGLTAFLETFWDSGQPRFGESGALGWKTWMDKTTTDKKPLALESLDFKKIFKSCHPSHDNETEDTAEKEEELIKGLHKWEAWLKVEVSREQTQLKPWQPDQATGETEDDCEDPERIIIFDDISSSPFKLCNPPNKFKLILCFLEMLGVPSRPLSSSQSSDIHRYFELSVESLQQVLNQSDFNVHGIGWQRYGYWYNTRDKTRMKPSFETLQLVRNIFVQSISLFEGDSKNYLITTWLQYEFYLTQLESLRKARKQKLKEVYKLAKAILKEPSNRNNFQVWEVFAQITALSGDTLEARHMFDSTLSLGSQLAVNDANKRITLAPLYRSCAEMELKQAMESNKSSPVNHNRLLHLLVSFAENNQYEPAMESIIANGVSSAKILRAKRTYSELCHDSIRQLNDCPSEDNKKVLSCVHCIVCCALFAYVSSGIQAAVAVYEQVLSSLSSPDDSLHHEHLWTSYFCLLKMHTKQETMSLRTVKQAIHRAISIFPNNPFFLDYYHQVELKSNLTGEVRRFFDHLTHSATTPIPWIYAIHYEDMRAKATLSAIDCSDYRVSAGDGQSAGLVTSLPTTGISHRQRALFDRATSSVAGRQCIGLWRMYMEFELNQGNQEQAKAVFYQALQNCAWAKTLYLDAIKAFPDDLQNTVDMMEEKELRVRTPLEEIDILMEEFSGQAWLHERPKTIECLTTSEADWLISTTEADWLISTASEADWLISTTEADWLISTASEADWLISTASEADWLISTTEADWLISTTSEADWLISTASEADWLISTASEADWLISTASEADWLISTTEADWLISTASEADWLISTASEADWLISTASEADWLISTASEADWLISTTEADWLISTASEADWLISTASEADWLISTTEVYEYIKGGHSF*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08424	NRDE-2	NRDE-2, necessary for RNA interference	Family	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011049	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013633	Family	siRNA-mediated silencing protein NRDE-2	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13471	TETRATRICOPEPTIDE-LIKE HELICAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0031048	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:1902369	Biological Process	negative regulation of RNA catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-