Gene detail

Detailed information of alvinactis_v1_g14248 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g14248	GLYCOGEN PHOSPHORYLASE	chr_7	4893782	4907769	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g14248

ATGGGTGAAAAACCACAGTCCGATGCAGATAAGAGGCGTCAGATCTCCATGAGGAGACTGCCTGTGATCGATGGCGTCAATGATTTAAAGGAATCCTTCAATCGCCATCTCCATTATTCGCTGGTAAAAGATCGAAACGTGGCGACGAGAAGGGACTATTTCCTGGCATTAGCGCATACAGTAAAGGACCATCTGGTGGGAAAATGGATACGAACTCAACAGACATACTACGAGAAAGACCCCAAGCGTGTATATTACCTTTCGTTGGAGTATTACATGGGACGTGCACTCAGCAATACTATGATCAACCTGGGCATACAAGGGGAATGTGATGAAGCGCTGTATCAGCTTGGTCTAGAGATGGAAGAACTGGAAGAAATGGAAGAAGATGCTGGTTTAGGTAATGGTGGACTTGGCAGACTTGCGGCATGTTTTCTTGACTCCATGGCAACACTAGGCTATGCTGCATATGGTTACGGCATTAGATATGACTATGGCATCTTTAAACAGCATATAGATGAGAAAGGAAATCAGATTGAACTTCCTGATGATTGGCTAAAGTTTGGTAACCCTTGGGAAAAGGCTCGTCCAGAATACATGATTCCCGTTCAATTTTATGGCCAAGCCCATAACGGCAACGATGGGAAGCATAGATGGGAAAAGACAAGCATCGTGTATGCCATGCCGTATGACCAGCCAATTCCTGGATATGGTAACAACACATGTAACACTATGAGGTTGTGGTCTTGTAAATCATCCAATGATTTTGACTTGTCCTATtTCAACGATGGTGATTACATCAAAGCAGTGTGTGATAGAAACAAAGCGGAAAATATCTCAAGAGTCTTGTATCCAAATGACAATTTTTTTGAAGGGAAAGAGTTACGACTCAAACAGGAGTACTTCATGGTGTCTGCCACCTTACAAGACATCGTTAGACGCTACAAGGCTTCTAAATATGGTGATCGGTCTGTAACAAGGAAAAACTTTGCTGACTTTTCTGACAAGGTTGCCATACAGCTTAACGACACCCATCCATCACTAGCCATTCCTGAGTTGATGAGGATATTTACTGACCTTGAGGGAATGGACTGGGACAAGGCATGGAACATCTGTATTAACACATTTGGTTACACCAACCACACCTTACTACCTGAAGCTTTGGAGCGATGGCCAGTCGGTATGCTAGAATACATTCTACCAAGACATTTAAGCATTATCTATGAAATCAATGCTCGACATTTAAAGGTTGTACAAAGCAAGTGGCCTGAAGACATAAATCGCATGAGGCGAATGTCGTTGGTAGAGGAAAGTCCTGAGAAGAAAATCAACATGGCATTTTTGTGTATTGTTGGTTCCCATGCAGTGAACGGTGTTGCTGCGATGCACTCACAGCTGCTCAAGGACGGGATGTTCAAGGATTTCTACGAGCTTAGTCCAGAAAAGTTCCAGAACAAGACCAATGGTGTGACACCACGTCGTTGGCTCCTTATGTGTAACCCAGGCCTCGCTGACCTGATCTGTGAGAAAATAGGTGAAAGCTGGACGACTGATTTGTCACAGCTTTCCAAGCTGACTCCATTTATCAGCGATAAGACCTTCTTACATGCATTTACAAGAACTAAACAGGAAAATAAAATCCGTCTTGCTGCTTACATCAAGACTGAGTTCAGAATTGATGTCAATGTTGACTCTATTTTTGATATCCAAGTCAAAAGGATTCACGAGTACAAGCGACAGCTGATGACATGCCTACATGTTATCATCCTTTACAATCGTTTGAAGGCCAACCCAAACAGGACTTTTGTCCCTCGCACTGTTATGATTGGAGGAAAAGCAGCTCCAGGGTATTACATGGCTAAACTTATTATCAAACTCATTAACAGTGTGGCAAGAGTGGTCAATAATGATCCAATTATTGGAGACAAGCTGAAGTTAGTATTTCTGGAGAATTATAGAGTTTCCTTTGCAGAGAAAGTTATTCCAGCTGCCGATCTATCAGAGCAGATCTCCCTTGCAGGAACTGAAGCATCTGGAACTGGCAATATGAAATTCATGATGAATGGCGCACTGACAATAGGAACTCTTGATGGCGCAAATGTAGAAATGTGTGAAGAAATGGGACAAGAGAACATGTTCATCTTTGGAATGACGGTAGAGGAGGTGGAGAAGTGTAGGAAAGAAGGATACAATCCTAAAGTATACTATGATCGCAATCCTGAGCTCAGAAAAGCCTTGGACCAAATTCGTGATAACTGCTTTTCTCCTAGAGAACATGGTGTCTTTCAGGATATTTTCAATGCCATGCTCCATCACGACAGGTTTTTACTGATGGCTGATTTTGATGCCTATCTCAAGTGCCAGGAAAAAGTCAGCCAGACTTTCATGAATCCCAAAAAGTGGTACACCATGACAGCTATAAATGTAGCAACATCAGGGAAATTCTCATCTGACCGCACTATAAGACAGTATGCCGAAGAGATCTGGAATGTCGAGGCTATACATCCAGCTGATATGAAGCCTGTAGCCATTAATGAAGCCTAG

Transcript

alvinactis_v1_g14248

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00343	Phosphorylase	Carbohydrate phosphorylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000811	Family	Glycosyl transferase, family 35	Interproscan
IPR011833	Family	Glycogen/starch/alpha-glucan phosphorylase	Interproscan
IPR035090	Conserved_site	Phosphorylase pyridoxal-phosphate attachment site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11468	GLYCOGEN PHOSPHORYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004645	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005980	Biological Process	glycogen catabolic process	Interproscan
GO:0008184	Molecular Function	glycogen phosphorylase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-