Detailed information of alvinactis_v1_g14161 in Alvinactis idsseensis sp. Nov. Gene info
Gene IDAnnotationChromosomeStartEndStrand
alvinactis_v1_g14161RNA POLYMERASE II-ASSOCIATED PROTEIN 1chr_738937523921646+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06391MAT1CDK-activating kinase assembly factor MAT1FamilyInterproscan
PF08620RPAP1_CRPAP1-like, C-terminalFamilyInterproscan
PF08621RPAP1_NRPAP1-like, N-terminalFamilyInterproscan
PF17121zf-C3HC4_5Zinc finger, C3HC4 type (RING finger)DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR004575FamilyCdk-activating kinase assembly factor MAT1/Tfb3Interproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013929DomainRNA polymerase II-associated protein 1, C-terminalInterproscan
IPR013930DomainRNA polymerase II-associated protein 1, N-terminalInterproscan
IPR015877DomainCdk-activating kinase assembly factor MAT1, centreInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR039913FamilyRNA polymerase II-associated protein RPAP1/Rba50Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR21483RNA POLYMERASE II-ASSOCIATED PROTEIN 1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005675Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0045737Biological Processpositive regulation of cyclin-dependent protein serine/threonine kinase activityInterproscan
GO:0061575Molecular Functioncyclin-dependent protein serine/threonine kinase activator activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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