Gene detail

Detailed information of alvinactis_v1_g12282 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g12282	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	chr_6	4393328	4397058	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g12282

ATGTGCAAAGAATTCCACTGTGAGTGTTGCCCTGATGACCTGCCACAGATAATCTGTATCTGTGTAGATTGTTACCATGGCGATGAGGAGCAAGAGTCAAAGACACAAACGGGAGAAAATCCCGACAAACCAAGTGACGTAGCGAAAGATAACTATAATGGCCAAGCAGAAGGAAGTGATCAAGAATTGTTGCCATCTGAAGAGAAGATCCAAAATGGAGTTCCAAGTTGCTGTGGAAATACTGACATTAATCTTGAGAAAACGGAAAAGCTACCATGCTGTGGTACAAAGGACAGCGATAAACCCTGCATGCCCATTGAGGAAGAACGTTTCACTGATAAGACCACAAGTACCCGTCAAACCTGCTGTGAGTCAAAGAGAGCTAACGCTACAAGACCAGAAAAGTCCTGTGAACAGGAACACGAGAGTCGCTCTAAAGAAAAAGTAAATCTTCCAAGCAATGTTTGTCAGAAAAGTCCTCCACTAAACGCTGCTTCGTGTCGTGGTTCTGTACAAGAGAGTTCAAGTGAAGTAACCACTAACATGGAACAGAAGCAGAAATGCTGTTCAGCAAAGAAAGATGACAGTTGCCAGAAAAGCACAGCACAAAACGTTGCTCAGTGTTGCAGCACACGGCAAGAAAGTCCCACTGAAAGGCCATGCAATTCTGACAACAAGGAACAGAAGAAAAGTTGCTGTTCAAAGAAAACTGGTGACATACTAGAAGGTCAAGACATTGGGGAATCCAATAGTTTGGAAAAAGTTCCCCAGCAATCAAACTCGTGTCCTTCCAAAACATCATCATGCAGTGACGCCAAAATGGGAGTAGTTTCTTGCTGTGATTCATCATCAAAAGACCCTGAAAGAATTGAAATCAAAACAACGGCTCAAAAACCAAAAGAGAACGGTTCATGCTGTTCTTCAAAGACGAGTCCATGCAGTAACATGAACACCAAAAGTGGAAAAGAACAGAATGGTGTGATCAAGTCACCTTGTTGTCCAACAGACAGTACGTCATCATCGACAAATGTAAAATGTGGTGCTGCACAACAAGACGATGAGGACACTTGCTGTTCAGCTAAAACATCTTGCAACACGATTGTAGCTGATGGTTCATCATCGTGCAATGGAAAAGCCAAGTCATGCAAGATGGATGAAACAACATGTCCATCGCTGTCACATTCAGACAATGAAGCTACCTGTGTGACGTCACAGAAAGACAAGTGCTGTGGGAAGGATGAAGAACATGACTCACTTCGAAACGATGAATGCTGCACAAAAGAAGAAACAGTGTTGCTCATCGACCCCTGCGAGAACCCAACGACCCAACCCAATTCCAAAATGTCGAAATCACCTCTGGTTCGAAGGAATACCACGAAACTGCGAGTGCAGAATATATGTTGTGCAATGGAGGCACAGCTCGTTGAAGAATGCTTGAAACCCTTAAAAGGGATTGAAAGTGTTGCTGTTAATGTGATTGGACGAGTCGTTCATGTACGTCATGATCCGGAAGTGACATCACCGACCGAACTTGTGAACTGTCTCAACAAAGTGCACCTTGGAGCGACTGTGATGGAGATCGGTGCGCACCAGGATAAAGAGGACGGTCGAATGCCACGCCTACTCAAGCTTTCCATCGTATATGTACTGATTCAGGCCATACTACTCGTTACAGCTGTCACTGGTCTTTTTCTTACGCAGTCGTGGTACCAATGGATCGCGATTGCCGAAATTATATTTGGCGGAGCCCCTATCTTGAAATACTCCATCATCTCAGTCAAAAACCGTAGAATAGACATCAATATCCTGATGTTAATTGCTATAATAGGAACAATAGCTATCAGTGAATGGGTTGAAGGGGCTACAGTTGTCTTCGTGTTTGCAGTCGCAGACGTCTTACAAGAGTTTTGCATGTTTCGAGTCCAACGGACAATCTCCGGACTCATGCTGAAAAGACCTGAAATTGCAGTTCTGGTGGAGACAGGAGAGAGTGTGCCGATTGAAAGTGTAGCTGTTGGAACGTTGATTGCAGTAAGACCAGGGGAACTCATACCTCTCGATGGTGTGGTGGTCAAGGGACGTGCTGCAGTGGATGAGAGTTCCATAACAGGAGAAGCACTACCTGTTGAAAAAACTGTCATGTCTAAAGTTTTCAGTGGAACAGTTAACCAGAATGGCTACATCGAAGTGGAAACAACTTCAGATTCATCTTCCTCGACTGTGTCCAAGGTTGCGCAGATGGTCCAGGAAGCACAGTCGAGTTCCACCAAAACAGAAGCCATCATCAACCGTTTTGCAAAATACTACACACCCTTAGTAGTACTTATAGCTGCTCTTATTGTTGTCATTCCCGCTATTCTAGGAGCATCTGGCGTTGGAACATATATGCAAGATATTCGCGAATGGGGCAGAAGAGCGTTAGTAATGCTAGTCATTGCCTGCCCCTGCGCTCTTGTCATGGCCACCCCTATTGCAGTAGTTTGTAGTATTACTGCGGCTGCGCGAAAAGGTGCATTGGTGAAAGGAGGTGAATATTTGGAAACTTTGTCGAAGCTGAAGATTCTGGCTTTTGACAAAACTGGGACCCTGACTGAAGGAATGTTTCAAGTCACGGATATGGAAAGTGTTAACGGCGAGGACGAACGAGATTTCCTAAGACTGGCTGCAGGTTTGGAGAGTAAAACGGTCCACCCCATTTCTGCTGCCATAGTGAATGAATTCTCTGGCTGTGTTGCTGAAATGGTGAAAAGTCAGATAGTCACTCTGCCGGAAGTCACACAGTTCACCATGTACGAAGGCCAAGGCATATCGGGACTAATCGAAGGAAAACGCGTTCGAGTCGGAAACAGAGAAATGGTTGAAAACTGCGGTGCATCCTTGAGCGAGTCCATGACTTCGAAGTACCAGTTGTGGTCATGCGAGAGCAAGACTGTTGTGTTTTTGTGTGTCGACGAGAAGGTGTCCCTCATGATTGCCCTTGCCGATTCCATACGACCAAACACGAGCCTAACTCTTGAATGGCTAAGAAACCTTGGTGTCCAGACCTCTATGATTACCGGTGATAACTCACGGACGGCAGAGGCCGTGAAATCGAAGTTAGCAGTGGATGAATGTGTTTCAGAGATGAAACCACACGACAAACTCGAATGGATTAAAGAAAAGCAAACGCGTCAAACTCTTGACCCAACTGACCAATCACGTACTTGTTGTAGGAAATCACGTGACAAACACGTCGTAGTTGGCATGGTCGGTGATGGCGTCAACGATGGCCCCGCCCTGGCCTCAGCGAATGTTGGTATAGCTATGGGTGCAGGTGGGACCGCTTTAGCTGTAGAGGCTGCAGACGTTGCTCTGATGAGTAACAACCTTGCTAAAATCCCCGAACTGATCACTTTGGCAAAGTTTTGTAATCGTGTCGTCAAGCAGAATATCTGTATCTCAGTGGTGCTAAAGGTAGTTATCGTGATAGTCGCCCTCAGTGGGTATGTCACTCTATGGATGGCTGTTGTTGCTGATGTTCTTGGACTATTGGTTGTGATTCTGAACGGTCTGCGTCCTCTCTCGTGGAAGGCACCGAAGTCGCAAAGATCTACACCTCTTGATATTGAACTGGGATTCAAAAAGACAGGTTACAAAACTATCGTGTGA

Transcript

alvinactis_v1_g12282

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00702	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001757	Family	P-type ATPase	Interproscan
IPR006121	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR027256	Family	P-type ATPase, subfamily IB	Interproscan
IPR036163	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR044492	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR051014	Family	Cation Transport ATPase Type IB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48085	CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006812	Biological Process	monoatomic cation transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0019829	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-