Gene detail

Detailed information of alvinactis_v1_g11344 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g11344	PROTEIN CBG26694	chr_5	22167533	22177623	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g11344

atgggctattggcatgttccactggatgaagagagtccctacttgactacattcagcatcccctttggaagatttcgttttaaaagattgccgtttggcttaaccgtctcgcaagacatctttcagaaagaacttgacatagcgctagaaggccttgccagagtaacaggtatagcagatgataccttcgtatatggctctacagagaaagcgcatgacgacagcctcaccaagctcatggacagagcaagaaaaaagggattcacggctacagagtttgtactaagagccctgaaatatgatgtcaccgtcatttacgtcaaaggcgccgatgtacctattgctgacgcactctctagattgtcacctcaaccagctccagcaaacaatcagctaccacagcttgacattcatcatgtcaccaatacgcttcccgcgtcaccattgaaactacagcaaattcgcaacgaaacgacgaaagaccctgtcctatcacagctaagagacacaatctacaaaggatggccagacagcagggataactgcccccaaaccactccacgactactggaattaccgttcacaagagttcaggaattcgaactttgcgacttcatacggctttcaacatgtaacaagttcttcatgtacccacaatctaacggatatgcacaacgcatggtacagactgtaaagagtattctcaaaaaatgcacagaagaaggggaagatccataccttggactactagcgtacaggaccacaccaattgaccgtcacctaaaatcaccagcagaactgttgacgaacagaagattcaagagtacactaccgctgttccaacgagcctgcctcggcggcaccaacaaagaagaggtaaaagcaaccttgtatcagcgacaagaaaagcaaggtagtttctacaaccgtactgccggacaaccccttacacccctacaggtcggtcaacagatacgcatctacgacaatcgcagacatagttgggaaccaggaacagtcgttaaaccaactccagaaccatggtcatacctagtgaagaatgacccaactgatgtctcatatcgacgaacaagatctcagcttcgaacaaaccacgcagcccctcaaagcccaacaccagtcgcggcactgccacaaacacagaactgcgcaacacctccaacagtaccagttgttaaccatcgacctgcgacaacgacagacacaagtgcaggaaacagcaatcaaccctacacaacaagatctggacgtattgttaaaccagtacaaagactaaacATAACTAGAATATCACAGTTTATGAGTCTAGAACAACGTGACTTGGACATGATTGGACTAAGATATCATTCGGATAAACGGCGATTGTTAGATAAACAACAGAAGCTAGCAGCAAGCGTAATGGGATCAGGAGCAGCACAAAGTGGACCTGGTGGAGGAAAGCGTACAGACATTGGAGGACTGGAGAATGGTAAACTTTCCCTTATATTTGTTCCAACACTGAATCCTTTGGTAGGGGAAATATCATGCACCCCCACTTTGACAAATGTTCAATTGGCATGTTACAATGCCTTTAATGAGAAAGAAGAACTCCATATCCCAGAAGGAATTGTTATTATAATCACCGACAACACAAGAAAGAAGATGATTTCTAAAATTCAAAATGACATTCAGTTGCAAAAGGTCAATAACATTGGATATCTCTGCCAGGTTAAAGCAAAAGAACAATCTTATAGTAACGATACATGGGAATCTATAAACAAGTCATCAGAAAGTTCTGACCATTCAAGACAATCCCTGGAATTTGCTGGCTATTCCGCAAGAGCACCCCAGAAAATACCTTCTGCTTCCATCCCTTCTAATGCTTCCAATGCCAAACCTGATGTGCAGATTGTTACGAAAAACCGTCTATGGGACAAGGCGTGTGTTTATGACCATGCCCGTTACCATCCAGATAACATTACAATTACAGCACCTGCAAAATTGCAAGTGCACACGGACTTCATCCAAAAAGATGAGGATATTGCCTTTAAAAAAACAGATTTGTCCACAGTTAACATTGATGAAGATGAAATAGAATTAAAAGATATGATCGGAAAGGGAACATTTGGAAAGGTTTACAAAGGGCTGTGGAAAGGGATGCAAGTAGCGATTAAAGAGATTCCCAAAGGGTATGGCGACCCTGATCTATCTGAAATAGAAATTTGCAGGCAAGTTTCATGA

Transcript

alvinactis_v1_g11344

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-