Gene detail

Detailed information of alvinactis_v1_g10390 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10390	LYSINE-SPECIFIC DEMETHYLASE	chr_5	6527284	6565358	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10390

ATGACTAGTCTGAAGCATGAGAAACCATGTAATATCATTGCTGTAGATGTTGGAACTACTCTTATAACATGCCATCTCTTTGACAAATCGGGCCTGTCCAAGTACAACACTTCAAGAAAGATAGAGCTGTTATACCCTCAGCCTGGATGGGTTGAAATAGAACCTTATCAATTATGGGAACAGTTTCAGGATGTGATCTGGGAAACAATGGCAGCCGAGCAGATAACACCAGAAGATGTTACATGCATTGGGATAGCAACACAAAGAGCAACCTTCTTAACAATGGATAGAAAAACTGGCAAACCACAACATAATTTTATAACATGGCAAGATCTTCGCTCAAATGATCACACAGAAAACTGGAACAAATCCTTAGCTCTAAAGACTCTTCAAACAAGTTCCAAGTTCTTGCACATGATCTCTCGGCGTAAAAAGTTCTTATTAGGAAGTGTAATCAACTTTTCTCCTCAACATgcttcaatgaggcttgattatgtccTAAAACACCATAATGAATTGGAATGGAGCTCACTTCTTACATCATTGTTGAATATTCCTGTGTCAATACTGCCAAAGATTGTGGATACATGTGGCACTATCTGTGACTCAGCTAAAGAAATATTTGGTGCACCAATTCCTATTAAGGCTGTGGTCGCTGATCAGCAATCTGCAATGTTTGGACAATGTTGTTTTGACGTTGGTGATGTCAAGTGTACGTTTGGTACTGGTACATTTATTGATGTCAACACTGGCAAGTTTCCTCATGCTTCAATAGCAGGCCTCTATCCTCTTGTGGGGTGGAAAATAGGTTCTGAAATTGTGTACGTGGCAGAGGGGAGTGCCTCAGGTACTGCCACAGCTATTGAATGGGCACAAAGTGTGGGACTTTTTGATGATGTGAAGCAAACAAGTGCTATGGCGTTTTCTGTAGAAAATTCTGATGGTGTCTATTTTGTACCTTCTTTTCATGGCCTCCAGGCACCTATCAACGACAGTAAGGCTTGTGTTTCACTAATGGGAATCAAGTCATCGACAACCAAGGCTCATATTGTTCGTGCAATACTAGAATCCATAGCATTTAGATTCATGGAACTTTTGAAACTGTTCTCGAAGAAACACAAGTTCCTGTCATGGCGTCAATCAAGGCAAAGCATGGACAAGCCCTCACAAACCGATATGGCAGCCCTTGGTGCTGCCTTCTTGGCAGGGTTGGCTTCAGGTGTCTGGACATCCCGCGATGAACTGAAAGCGATAAGATGTACCCGCGCATTGTTCCAGCCCAAGGCTTCGATACATGAAAGATACAAAAAGACTGTAAAGGAATGGAAGGATGCTGTGAACAGAAGTAGAAATTGCCGGTTATATGGCTTTCTGCGACAGCACGACCCCATTGGTGATCCCGCGTTGCCAAATCTAAACCACAGATCATTACTACTAAAGGATGCCCCATTTTTATATGGTATTGGACTAGTCTATTTTAGCTTTTCTGCATACCAGTGGGCAATAAAAGTCTTTCAACAAGTCCTTTACTTAGATCCTGGTTTTAGTTGTTCAAATGAGGTTCATTTAAGACTGGGAATAATATACAAGGCCCAGAATAACCATGAAGCAAGTATAAAGCATTTTCACATGGCACTGATGGATTCCAATCCATGTTCATTATCGAAAGAAGAAATCCACTTTCATCTTGGTCACCTTTTTGAGATGCAGAACAAATGCCAAGAGGCACAGGAGATGTATGAGACAATCATCAATTCCCCTGGACTACCCAATACCGTAAAGGCTAATGCCTATAAACTACTAGGATGGATGTACTATAACAAAGATCATCTTGGTGATAGAGCCAGTAGAATGCAAAAAGCTGTTCAACTGTTACAAAAAGCCATAGAGACAGACCCCAACAATGGTTCATCATGGTATCTAATTGGAAGATGTTATGCAATGCAAGGAAAGGTGCATGATGCCTTTACATCGTACCGGCATGCCATTGATAAGTCAGAAGCCAATGCAGATACCTGGTGCTCTATAGGAGTGTTGTACCAACAGCAGAACCAACCAATGGATGCTCTACAAGCCTATGTTTGTGCTATACAACTAGACCCTACACACGTTGCTGCATGGACAGATCTCGGGATACTGTATGAAGCATGTGATCAGCCAAGTGATGCTGTCATGTGCTACAATGCTGCAAAGAAATATGGAGCCACAGACTCTGCGATAGATGCTAGAGTGAAAGCCTTGCAGGCACAGCAAGCCATGTTAGCGACGTCCATGGGAAACTTGAAAAAGAATATACCTTCAGTCGGCGAGGCCTGGAAGTTGCCAATACCAGCTGAACTTACAACTAGGACAATGAGAAATGCTCAGGCAAAAATGATtggacctgaacctgcacctgctcctactcctgctcctgctgacgctgctgctgcACCTCAGAATATGCAGTTATTGTATGTacaacaacaacaacaacaggcaatactacagcaacaacaacaaGTTAACAACCATTCCCAAGGTGTCGACATCAAACCACAGCAACCTATACCAACTTTAGTAAATACATCAGATCAACAAACAGAACATGAACAACAGATTCTACAGGGCCATGCCATTGTGACAACAGCACATGAACCCAATAACTTTGCATTGCAAAACGGCGATGGCGAGCCACACCCATCAACATCTCACGATAGTAGTCAACATAGTAGTTTAGTCAATACTTCAATTGGTTTGCCTCATATGGAGGTGCAAGGGAACGGACCGCAAAATGGTCCAATGGTGGTCTTATCTCAGGCTGACGGAACAGCTCTTTCTTCTATGAGTGAAGATCCTTTACTGTGCTCAGCGTCTAGTAGGACAGAAGGAAATGATGCAATGTCCACTTCATCTGCGCATTCTGATTCTACATTATTAACTGTGCAATCCATTGCCAACTTGTCTAGTAATACTCCAAGTCTTCTAACATCAATATCAGATACAAGTGTTTCATCTGCTGCCATGACTAGTGATGCATTGTTAAGATCTGACAATCCTACTTTAATGAGTAATGGTCCAGTTTCTTCAGAGGTTAATTCTAGTGGTGGCACTTTGGGGTCTCCGTTTCCAACACTAAACTACGTCACATCTCCAACACAAAAGTTCTTGACAAGTGTTTCATTTTCACCACATCTTACCCAGCCACTGACAGTAAATCCTTGTAGCTTGTCGCCAAACTCTAAGCAGTCGTTATTATCGCCGTCGTTAATATCACCATCCATGAGTATCGCCCTGGCGTCGCCGAGTACGTCCAAGTCACCATTAACAGCTATAGGCCAGTCAGGATTTCAAGTACCTAAGGTGTCATTATTCTATGACTACATGGAATTACCGGCACTACCTAAACCTCCATACCCTCCACTACCCACTGATAAGTTGTCTCCTCCCACTCCAAGTATATCTGTGGAAAGTAGAAAAGATGCCTTTTCCCCTGCATTACAGAACTTCTGTTTGTCATCTGCTCAGCCTGTTACTGTTGTACGAGGCCTGGCAGCTGCTCTCAAACTAGATCTCAGCCTGTTCTCTACCAAGACCTTAGTAGAATGTAATGGTGATCACCAAGTAGAAGTTAGAACTCAGAGACAGCAAGCATCTGATGAGAATTGGGACACATCTGGTGAAAATAAAGAGGAACAAGAGAGAGTTATGAGGGGAAGTGAGCCAATGCAATCGGACAGTGACTCGTCGTCTAGCTCCAAAAGTAGAAAGAGTATCAGGGGTAATAAGTTCAAATGGATCAAGTTTGGTACAAACGTTGACTTGTCAGATGAAAGAAAATGGAAGATTCAACTTCAAGAGCTGAATAAGCTACCACCATTTACAAGGGTTGTTGCTCCCAGTAACATGCTAAGTCACTTTGGTCACACTATACTTGGTATGAATTCTGTTCAACTCTACATGAAGATCCCTGGATCCAGGACTCCAGGTCATCAAGAAAATAACTGTTTCTGTGCCGTGAATATAAACATTGGTCCCGGTGACTGCGAGTGGTTTGCAACGCCTACTGAATATTGGGGAGTAATCCACAACCTGTGCGAAAAGTATAGCATCAATTTTTTAACTGGGTCTTGGTGGCCTGTGTTAGAAGAACTCTACGAGGAGCGTGTTCCTGTGTATAGATTTATTCAAAGACCtggtgatatggtgtggttaaacccaggtgttgtccactgggtacagtcattgGGTTGGTGTAACAACATTGCATGGAATGTTGGGCCCACAACAGGGCACGTATTTAGTATTGCTGTAGAGCGTTATGAATGGAATAAACTACAAGGTGAAAAGTCCATAGTTGCAATGATCCATTTAACCTGGAACCTTGCACAAAACATCCGAGTCACAGAGAAAAAAATATATGAACACATAAAacccacctccacaccaccacgcccacctccatacccacctccaccaccacacccacctccatacctccacctccacccacctccacacccacctccatacccacctccacacccacctccatacctacctcctccacacccacctccatacctacctccaccaccacacccacctccatacccacctccacacccacctccacacccacctccacctccacacccacctccacacccacctccatacctacctccacacccacctccatacccacctccacacccacctccacctccatacccacctccacacccacctccacTGTTTTACCAGTCTCTATCTAAATTAAGCTTGTTTTGTTTCGACAGGTTGAGGTGTTTAATCTTCTGTTTGTGTTAA

Transcript

alvinactis_v1_g10390

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00370	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF02373	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF02782	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan
PF13431	TPR_17	Tetratricopeptide repeat	Repeat	Interproscan
PF21322	KDM6_C-hel	Lysine-specific demethylase 6/UTY, C-terminal helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347	Domain	JmjC domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR018484	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan
IPR018485	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR048562	Domain	Lysine-specific demethylase 6A/B-like, C-terminal helical domain	Interproscan
IPR051630	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666	Cellular Component	MLL3/4 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-