Gene detail

Detailed information of alvinactis_v1_g10289 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10289	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	chr_5	4907147	4917375	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10289

ATGGCGGCCAATATGGCTGGTTTGTGGAAAAGATGGTTGAATTACGGGAGAAATCCTTTACTTCGTGGTTTAATGTCAAGGTCTCTATCAACAGAAATCAAACCCATTGATAAAGTACTGATAGCCAACCGTGGTGAGATAGCTTGTCGTATAATGCACACAGCCAAGAAAATGGGCATCAGGACTGTAGCCGTCTATAGTGATGCTGATCAGAATGCGAGGCATGTTGAAATGGCTGACGAATCTTATCACATTGGCAAAGCTCCCTCAAGTGAAAGTTACCTGAAAATGGACAAAATAATAGAAGTCGCCAAGATGACCGGTGCACAAGCCATCCACCCAGGCTATGGATTCTTATCAGAAAATCCAGAGTTTGCTGAGTTGTGTGAAAAAGAAAATATTATATTTATTGGACCACCTCCGTCTGCTATCAGGGATATGGGTATTAAGAGCACTTCTAAGACAATCATGGCAGAAGCTGGGGTGCCAATCATACAAGGTTACCATGGCGATGACCAATCACCTGAAAGACTTCAAAAGGAAGCAGAGAGAATTGGTTATCCTGTGATGTTAAAAGCTGTAAGAGGAGGCGGTGGAAAGGGAATGAGGATCGTCCCAACAGCCAAGGATTTTGATAGTGCCTTAGAATCTGCCAAAAATGAAGCTAGAAAGTCATTCAACAACGATGACATGCTTGTAGAAAAGTATGTCGAAACTCCAAGGCATGTTGAAGTGCAAGTTTTTGGAGACAAGCAGGGTAACACAGTTTATCTTTATGAGAGAGACTGTAGTGTACAACGCAGGCATCAGAAGATCATAGAAGAGGCTCCTGCCCCAGGGGTGTCCCCTGAGGTCAGAAAGAAGATTGGAGAAGCAGCAGTAAAAGCTGCAAAGGCTGTTGGGTATGTTGGTGCAGGCACAGTTGAATTTATCTTGAACAAAAACCAGGAATTCTACTTTATGGAAATGAATACAAGGCTACAGGTTGAGCATCCAGTAACAGAGATGATAACAGGCCTCGATCTAGTGGAATGGCAGTTAAAGGTTGCCGCTGGGGAGGACCTTCCCGTGATGCAAGAAGACATTCAACTCAATGGTCATTCATTTGAAGCAAGACTTTATGCCGAGGACCCTGAAAGAGAGTTTCTCCCAGGAGCTGGGCCCATCCACCATATGACTACACCACAGGCAACCCAAAATGTTAGAATTGAAACTGGTGTCAGACAAGGTGATGAAGTGTCTATTTATTACGATCCAATGATAGCAAAGCTGGTTGTCTGGTCAGAAAACAGGTCATCTGCTCTTCATTTACTTAAAGAATCCCTCTTGCAGTATCATATCGTTGGCTTCAACACAAATGTTGAATTTTTAACCAGTTTATGTGACAACAAATTCTTTAAAGCTGGAGATGTTCATACAGATTTTATTAAGCAACATCACAAAGACCTGTTTCCGGCAAAGAAAGCACTCTCCAATGAAGTCCTAGCCCAGGCTGCTCTCAGTTTGATACTGATTGAAAATGAGCACAAGGAAACCATGAGGACATCATCTCATGATGAATTCAGTTTATGGAAATCTAGTTCAGGGTTTAGAATTAATCATCACAATAAACGGCGGATACGACTGAGTGATGGAGACAAGAAAATAGACATTCTAGTTACTTACAAGAGCAATGGTTCCTTCATTATTGAGGTCGAAGGAGAACAGTATGATGTTACAGGACAATTTCAGAGGGAGGGGGACAGGACAAATTTGACAGCCACTGTGAATGGCAAAGTTGTTAAATCATCGATTGTTGACCAAGATGGAACTCTTCATGTTTTTACCAAGGATGGCTACCACTCTCTAGACAGACCAGTCCCCAAGTATTTGAGAGGGAGAGTTAGTGGCAGTACTGCAGGAGGTGCCAAAGCACCAATGCCTGGCAACATAGTAAAGATTCTTGTCAAACCTGGTCAGACTGTAGAAGAAGGTGATGTACTAATAGTGATGGAAGCTATGAAAATGGAGTATTCCATCAAGGCCCCAAAGGCAGGGAAGATAGAAAAGATTCTCTGTGAGTTGAATGGGACAGTTGATCGCAATGCACAACTGGTACAATTTGAGGAAGGACAGGAAGAAGAAATAGAAGAGGACGACGTCGACTGA

Transcript

alvinactis_v1_g10289

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00289	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF00364	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02785	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF02786	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF19331	MCCA_BT	Methylcrotonoyl-CoA carboxylase subunit alpha BT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000089	Domain	Biotin/lipoyl attachment	Interproscan
IPR001882	Binding_site	Biotin-binding site	Interproscan
IPR005479	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR005481	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR005482	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR011053	Homologous_superfamily	Single hybrid motif	Interproscan
IPR011054	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR011764	Domain	Biotin carboxylation domain	Interproscan
IPR016185	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR045774	Domain	Methylcrotonoyl-CoA carboxylase subunit alpha, BT domain	Interproscan
IPR050856	Family	Biotin-dependent Carboxylase Complex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18866	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004485	Molecular Function	methylcrotonoyl-CoA carboxylase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-