Gene detail

Detailed information of alvinactis_v1_g10278 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10278	ECTO-NOX DISULFIDE-THIOL EXCHANGER	chr_5	4780262	4796674	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10278

ATGGCTTTCATGGCTAATCCTGCTACTGAAGCTACCCTTAAAAAGCTGTTGAATCAGCTTCTGATGTCTGGTATGCCAATGCCATTGGACAACCAGAGTACAGACTTCAGAAGACTTCAAGAAGAACTTTTAAAATCCACCCAAGGTCTCCAAGGATTCGAAAACAGAATGAACATGGGAGGCCGTCAATTTGGAGACGAAAATAGACTTTCCAGAGAACAAGTGGATGCAAGGGAAAGGAACTATGGAATTGATCTTGGAAAAAGTGAGCCAAAAGGTCAAGATAGGTCTAATTTCTTTGGCGGTGCTCTGGAGAGAAAAGAGAGCATGCCATCTGGTCCCGAGTCATCATGGCAACAAAAGGGAAGATGGTCACAACCGGGGGGGCTTGGTAGTGAGAATATCAGGGAAATGGATGATAGGAGACAAGATAGAATGGGTGAAAGAATGGAAATAAGAGAAGGAGGTGGAGGACCAAGATATGATATAAGTGCTGACAACAGAGGCAACTCCACCTTTCAAGCACCTTTTGATGTGACTCCAAATTTTACATCCGGTTTACAATTCCCAAATGCTTTCAACACAGGCCAAGATCCTATGCAGAGTGTCATGCAGACTGGAGTTGGGTCAGAACAGTGGCCATCAGTGAATGATCAAAACTTACAAAGTTATATGTATGGGATGGATACATCAGCTTCTTTTATACCATCATTCACCGTTGAACCTCCCCCTCCCAGTCAGCCCAGGCCATCACTGTCAGAAAAACCTTCTGGATGCCAAACTATATTTATTGGTGGACTTGCTGACACAATTACTGAGGATATCATGCGACAGTTATTTCTTCCATGTGGAGCTATTGAAAGTGTTAGAATATCCCTTGGAAAGGGTGGTAAAAAGTTCTCCCATCTGAGATTTATTGATCCTGCGTCTGTAGATTTGGCAGTAGGCTACAGTGGGTATAAGCTGTTTATTGGAAATGGCGAGCAAAGGTCTGGAGGACGCATGCACGTTGATCACGCAAAGTCCCGAGAAGATGAGAAAGAGTATGAGAAAGTTTTGAGAGCAAGGGAAAGAGAGGCAAGGCATGTGAAAGATGAGAATGAGAAACCATTGGTATTATACACAGAAGGTACTGCAGCGGATCTTATGCAAAACATTCGCTCAAGCTCAGGGTTTCATGATTCCCTTGAAACCCTTGAGCAGTGGCTGGAGAGGGGTGAATGTACACGTAGAAGTTCATCCACATTCTACAACTTGTTGAGTGCCGTTCACAGTCACATCAAGAGACTGGTTAAAGAGAAGATGGAACATGAAGAGATCGTGGAAAGACAAAAACACGAACAGACTGAAAGAGCAAAGCTTATCATGGCTCAAGGTGCAGGCATTTTGAATATTTTCAAAGCAGCTTCTAAGAAAAGATGTTGGGATCATTTCAGTAAAGCTCAGCGAAGAAACATTGATGAATGGCATCAGCAGGTGGAAAAGGAAATTAAGATTAGTGAAGAACAACAAATGGAAAATCGACAAGAGGTAGGTATGGACCTTGACGATGAGCTAGACCACACCCAGAGCACATCAGAAACCAGTCAACCAGAAGATGAGGAGACTGGTGAACCCAAAGCAAAGCAGCCAAAAACACAAGATTTTGAAGAGTGTACTCAAGCTTCCCTTGAAGCACAGGACATCAAGTTTCGTGCACAGAATGCAGGTCTGAAAGCTTTGGCTCGGAAGAATGCATCCTTGATGTGGGAAGTTGAGGGTTATAAGAATGAGATGGTCACTCTTAAAGAGAGGTTTGCCAATGTATTTCAAGATAAGGATTTACAGATTGCGAGGCTCATGACTGCCGTACAGGGATTACAGAACTTCTTCCAACACGTGACTTTGAACACGCCTGAGACAAATACATCAAATATAGAAGTAGAGGTTGTGAAGGAAAGTACCGAGTACCGTGAGACTGACACAGCAGAACACGACACAGTAGATCAAACTTCTGAATTAAACAACCTGGAGACAAAATCATCAGAGACTGATgctgaagaacagccagagaaagctgaagaacagccagagaaagcagaagaacagccagagaaagctgaagaacagccagagaaagctagtcagaagaaggctgaagaacagccagagaaagctgaagaacagccagagaaagctagtcagaagaaggctgaagaacagccagagaaagctgaagaacagccagagaaagctagtcagaagaaggctgaagaactaccagagaaagccagtcagaagaaagcaaagagaggacgaaaaaggaaagaaggaaacactgaccaagaagtaacggaagaaagtgaaacatcagagactaatgttgaaaaacaaccagagaaagccagtcaaaagaaggcaaagaggggaagaaaaaagaaagaagtaaagacagaccaagaagtaacggaagaaagtgaaGTTTCTGAGCAAGTCACTGTTGCGGAAGCTGTTGCCACCGGTGATGAAGAAAACCAAGTCGAAGCCATGACAACCATGACAGAGGGTGAGACCAAAGCTGAAGACGAGCACGGAGAGTCGGTATCACCTCACAGCACACGTCACACTGATGTTGTCCGCTTGACAAGCAAAGAAATGTCTGTCGTTGGTTTGCTTTGCTCCTATTTACAAAAATGTGTAGGAATGGAGACAGATGAGGAGTTCCAGATTGGTATACTTTTAATTCTTTTAACCTTTCTTGCTGTCTCGGCAATCTACTGTTTCCATTGGATTAGAATATGGACAAAATCGAACAACAAAGACTCACCTCAACCAAATCCTGCCACACGAAAACAATGTCCACACAGATGGAAAGTAAAAGACTTCTATTTTGAAAACCTCGTCTTCAAATCACCACAAGGGAAGGATGTGTGGAAAGCTCGTCTTAAAAACAGCTCTCAGAGAGTGAATATTCAACTTATTCCTGGCAGCGAATGTAGTGCTTTAGGATTTCGTTGGGGGTTGCTTGACAACTATCACGTCAGTGTCAGGAACATCTTTGGAGTGTTTGCAAGAATAGCACAGAGTACGGCATTTGAAGACCAGTTAGAGATCAATAATACAGAAATATTTGGAACCAAAGTTAGAATCTACAAGCCAGTCAACAAGACATTGGATAAAGATGAGACAAAGAACCAAGTAGATGAAGAGCTTCTCCCTGCAGTGATTTACTATCATGGAGGAGGCTGGACTATTGGAGGTCTTGATGCTTGGGATGCCTTTTGCAGAAGGCTGGCTGTAACTGCTCAAGTTGCAGTTGTGAGTACAGATTACAGCCAAGCACCGGAATACTTATATCCTACTGCTTTTAATGAATGCTATAATGTTGCTGTTGGTCTTCTAAACACTGGTGCAAAATATGGCATAGACATCAAAAAGATTATGGTTGCAGGGGACAGTGCTGGTGGAAATTTAGCCGCTGCGGTTGCTCATTATCTCGCTTATGTTGGAGAAAAACATTGTAGAAAACGGTATTTAGCTGGCCAGATTTTGATATATCCATCCCTACAACTGCTGGACTTTAACCTACCATCGTATCTGAAGAATGAACACGGTGTGGTCCTCTCACGACGGCACGTTGCAGAGTTTACTTCAATGTATCTGACAGGAAACCTGAATCTTGTTGATGCAATGCTTGAAGGAAATCATTCCAAACACTTAGAGAACACAACTTATATGTCACGTGTACGAACATCAGAGACGAGCAATAACAGCAGTAACAATGAGAATGAAGACAGCTCTGATGGAGAAGATTCTAGTGCAAACATCACCAAACCTTTTGTCGATATGAGTGATTTAGCAGCTGAAGCTCTTACACACTTTAAAGGGTCCCCTCTTGTTGCGACAAACTTTCGTGGAATTCCATCAACCTTTATAATCACTGCAGAATACGACCCTTTGAAGGATGAAGGCTTTCTGTACGTGAAGAGGTTGAAAAATGCAGGGATACAAGTTGTGCACAAGCATTATAATTCTTTCCATGGATTTGTGACAATTACTAGTGAACCTTGGCCTTATGGCACTCAAGAGGCAGCAGAAGCATTGGAAGACATAGTTGCGTATATAAACAGAATGAAGACAGTAAAAGGACAACCAGAAGAAGAGCAAGATGACGATTCTTAA

Transcript

alvinactis_v1_g10278

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF07859	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013094	Domain	Alpha/beta hydrolase fold-3	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR033140	Active_site	Lipase, GDXG, putative serine active site	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038876	Family	Ecto-NOX disulfide-thiol exchanger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16001	ECTO-NOX DISULFIDE-THIOL EXCHANGER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007624	Biological Process	ultradian rhythm	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-