Gene detail

Detailed information of alvinactis_v1_g10269 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10269	DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED	chr_5	4672508	4686094	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10269

ATGGGAGTCAAAGGACTGTGGCAGCTTCTTGAGCCAGTTGGACGACCCGTTACACTTGAATCACTTGAAGGGAAAGTCCTTTCTGTTGATGCCAGTATATTACTGAACCAGGCAGTGAAAGGAATGAGAGACAAGTCAGGACAGCCACTACCCAATGCACACCTTATCGTGTTATTCAACAGATTGTGTAAACTGCTGTTCTATGGGATAAAACCAGTGTTTGTCTTCGATGGTGGTGTACCTATTCTCAAGAAGAAAACGCAGGCTGCAAGGAGGGAAAGAAAGTTCAAGGCAAGATATGGGTCAAATAAAGCTGCTGAAAAACTAGTTAAAAACTACCTCAAAGTGAAGGCTTTAGAGAGTGTTACTGGAAAAAGAAGTGGAAATACTATATTCAGGAATGACAGTCAAAGAGAATCAGATATATTTGAGCTCCATCCCACTCCTGAGATACAAGATAAAGCTACCAATTCCTCAGAAGAAGATAAAGACAACGATGTTGAAATAAGTCTACTTGAACAATTTTATACCCAAAAGGAAATTGAGCATCAATTCCAAGACCCGTCATCTATCAACGTTGAGTCTGAAGATTTTCGCTCATTACCAGAAGAGATTCAACATGAACTTATTAaagacatgatggaggaaaagaagtggtcagtaaaacacactgtgccgcagGATGCATTGGGTTTCTCAGACTTCCAACTTCAAGGTGTTTTACAGCGAGGAAAACTCCACCAGCGACTCGACGAACTTCGTAAAACCATGAACAGCCGTAACACTGGTGAGATTGCTGGGTTCTCTTCACAGGATGCATCAGGAGCTGAGTTTATTGTCCAGTCAAAGAGAATCGTATCTGAAGACACTGGTCATTACATTCTTGTTAAAAGATCAAAAATTGGGAACAATGACAAAGAGCTTGCTACAATTGATAATTCCTGCGAAGGAGGATTTGTGCGTGAAGTTCCACAAACCCTTCCCGAAAATGTAGACCGTCCTCTCGCTCCAACATTCACTGACATTGACTTGACTCAAGAAAACAGCAGCGACTCTGAACCCAACTCTCCTCTGGTGGATGTACCTGAAATTGCTGTTCCTTCGTCTTGGGGAATGCAGGTTGTGTTAAACACAGGAGAGGGGAAGGATACAGAAAGGAGGACAAGCGGATGCGAAGGACAGTTGGTAAGCAGTTCTAGTAGGTGGAATAAGGAGAAAGCTAGCTTGAATGAAGTAATGGACACGAAGATGGAGGTTGGAGATTTGGATGAAGAAAAACAGACAACTAATTTAGTTGGTGGTTTAACTGAGACTGAGAGCAATGAAGCTGAAATTCAAAGACAAAAAACACAAATCGAGTTACTATTAAAGGCAAGGCAAAACTCAAATACTTCGCCTAGCTGTACATTAATGTGCGAGGCTCCGAGTATTGACACTACCAGACCTGCCATGGATGACGGAGAAACCAATCAAACAGCGGGTACGTCTTACGATGAGTTTGTCCTTCGTTTAGAAAGCAGTGGAGAAGATGAGAAGGATGATTTGTTGAAAAAGGAAGTAATACCGCCACTTGAGAAGGAAAACAACATGATTGTCTCCGATCATGAAAATGATGATCAGGATAGAAAACTCATTGCTGACAAGACACAAGATGAAGTACGTAATAATATGGAGATAGAAGACGAAGCCGATACAGAACTGAAAGATGACCTAAACGAGAATGAAGAGAACAACACCGCACCGTACAGTTTAACACAAGAGTCATCATTAGTTGATAAAGAAACAAACAATGTTGCTGCAGCTGTTTCAGAATTCGCGGGCTCATCCAGGGAAGATTTAGAAGTGATGCAGATGAATCTCGAAATGGAGCAGAGTTCGATTCAAAGTGAACGAGCGCGACTAGAAAGAGCTGCAGCGTCCGTGTCGAATGAAATGTTTACAGAAAGTCAGGAACTGCTTAGACTGTTCGGTGTTCCTTACCAAGTCAGTCCTATGGAAGCTGAAGCGCAGTGTGCATTTTTAGACTTCACAAAACAAACCCACGGTACGATTACAGACGACAGTGACATATTCTTATTTGGAGGACGAAGAGTCTATAAACACTTGTTTAACCAGAACAAGCATGCAGAGTTGTATACCATCGAGGCCATCAATGGAAATCTAGCATTGAATCGTTCAAAGTTAATTAAGCTGGCGTTGATCACAGGCAGTGATTATACAGAGGGTATACAAGGATTGGGTGCTGTGAGTGCCATGGAGGTATTGCACGAGTTTAACCATGAAGGATTTGAAGCCCTGCAAACATTTAAGAAATGGCATGACAAAACCAAGAACAATAAGCAAAAGACCCAGGAAACCAAAGTCAAAAAGAAACTGACTCAAAAGAGAATCGACAACTTTTTCCAGATAAAATTTCAAGAGACAAGAAAGAAATCGAGTAAGCGTATCCGACGTGTTGTCAATCGCTTTTTAAACCCACTCAGTGAAAGTAGTAGCAACGATGAGAAAACTAAGTCAACGGGATCCCGCAATAATCGTACAGCCACCCGCACCTCTCGCGGGCGAGGGAGAGGGACTACGCGAGATGCTGAAGCACAGAAAGAGGGCGGCGATGGAATACTTGATCAGGATTTACTTGACCAGTCGAATGGAGAATTAGAAGGTTTGATCGAGATGACTGATCTCTCGTGCGTCGATGGGAAGGTAGGACAGACAGACAGCAATGGAAGGGAACCTAGCACCAAACAACCAATGGGAAATGCGCAAGTACGAAAAGACGCGGAGGACTGGAAACAAACTAATATTATTAGTCAAAAACATGACAGAATTCCACAGGGTGACCGTGAAACATTATCGACCGTCAATTCGTCTAAAGATAAAGAAAAACATGATGTTAAAACATGTAGAGGTAAAGTGCGTAAAACCGCTAACGACTTCATATTCAATACAAAAGAATGTGGGTTTTCGGGTCTCCGAAGTGTATCCGAAGACAGCTCGACTTCTTCCGATACAGATTCCGAAGAAGAGCAAAGGTTTCGGCTCACCGAAGGCGAAGATACGAAAGAGCTTCGTCATGGAATTGCGGCGAGGATAGCTCATCGATTACCGAGATTACCACACCACCAACAACACCAGAAACACAGAAATTAG

Transcript

alvinactis_v1_g10269

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001044	Family	XPG/Rad2 endonuclease, eukaryotes	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR019974	Conserved_site	XPG conserved site	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16171	DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0004519	Molecular Function	endonuclease activity	Interproscan
GO:0004520	Molecular Function	DNA endonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-