Gene detail

Detailed information of alvinactis_v1_g10264 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10264	ALZHEIMER'S DISEASE BETA-AMYLOID RELATED	chr_5	4603508	4617333	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10264

ATGGACAGTAAAAAGGAATTTTCCCCTCACAGCCACATTCCATATGGTAAAGATGGTTCAGGTTTTTACTCAGACAATACCATTGGCTGTTACAATGTCATCCAAGAGGGGATTCCCTTAGTTTTAGAAGCAATAAAATCCTCTGTCGTCAAAACTGGCTCTGTGTTCACCATAGTGGATTATGGGACAGCTGATGGTGGTACTTCAATGCCGCTTATATATGCATCTGTAAAAGCAATACGAGGGAAGTATGGAGATGACATGCCAATCATGGTCGTCTATGAGGACCAACCAGTCAATGATTTCAAATCATTGTTCATGAGGTTACAAGGTCTCATGCCTGGACCACCGTCCTTTCTTATGGATTTTCCTAATGTCTTTGTCATGGCTTGCGGCACAAATTTCTACAGTCAATGTGTTCCAAGTAACAGTTTGAACCTGGGGTTTTCTGCGACAAGCATGCATTGGTTGAGAGAAAAACCCTGTGACATCACTGGAGCACTTCACCACACAATGATGTCTGACCCAGAAGAAAAAGACAAGTTCTGCAAACAAGCAGAGAAAGATTGGGAGCTCATCTTGTTGAAACGAGCTGAAGAATTAGTGCTAGGGGGCAGTATGGTACTTATACAATTTGCAGTTGATGAACAGGGCCAGTATCTTGGTCACACTAATGGCTCCAAAGTATCAATGTTTCACCAGATGTATGATTTATGGCGAGGTCTTGTAAATGAAGGAAGAATAACTGAGGAGGAATTCCAGCGTACAACGTTCGTCAACTATTATCGAACTGAAGAAGAGTTCAAAAAACCCTTTAAAGAGGCTGATTCTCCTGTCTCTCAAAAGGGCCTTGAGTTGGTTTCCATAGAAACGCGCGTCGTTCGATGTCCGTATCATCAGAGATGGATGACAGAGAAGGGAGATCCCAAAGCACATGCTAAATGGTATATCCCCACCTTGCGTACTTGGAGTAACTCTACATTTTTGTCAGGTTTGTCAGATTCTCGTTCAGCCGAGGAAAAAGCCGACATTGTAGATGAGTTGTTTCAGCGCTATGAATCTGAGGTTGCCAAGGCCCCTGAGGATCATGGGATGGATTACGTACATGCCTACATTGTCGTGCAGAAAAGGCGTCAGAAAAGTAATCCTTTCTCTCAGCATCTTGAAGTACACAGTAAGGTTTTCTGTGCCGTATCTGCAGACAATCCAAAACCATTACAGCATGAGGCACAAGTAGCGTTTTGGTGTGGAAAGGTGAATCAACATGTTGATCTCAAGACTGGTCATTGGATCACAGACAAGAATGGCAGATCCATGTGTGCCACCAGCAAAGAACAAGTACTAAGGTACTGCAAGCATACATATCCTTCACTGCAAATCAGCAACATAGTGGAGGCCAATAGCCCTATTACCATTGATAAATGGTGTGATCCCAAAAATGTCAATTGTACTGGGACTAAAGACATTGTGACATACAGATGTTTAGTTGGCCCATTTGAAGCTGATGCATTACTGGTACCAAAGGGCTGCAGCTTTGGTCATCTTCACAAAGGAAGTAAGTGTAAGTCACATGATGTCTGGCGCTCCAAAGCAGAAGGCAAGTGTGACGACCAAGCAATGAAACTCGAGCACTATGGCGTCTTGACCCCATGTGGAACAGGGATGTTTACAGGTGTCGAATACGTGTGTTGCCCCAAGAACATGACAGTTGAGAAGCCTAAAGAAAACCCTGTGATGAAGCTTCAGGTTGGTGGTCGTGAAGATGTTGATCTCCCCAGACCAACTGAGCATCCAATATCCTTGATAGAGAAGTTGGAAAAGGAGATCAAAAAGTACCCCAAGCACTTGAGTGGCAAGTCTATGGGTTGTGACCATAAGAAATACCATCGCCATCGTCAGTCCATGGAAATTGAACATCGCAACCGCATGTCAAATGTTATCAAAGAGTGGGAAAATGCTGAGAAACGTTACAATGCCTTGAAGAATGAGGATCCTGCACAAGCTGAACAAATGATCACTGGAGTTATGGATCGATTCAAGAAGATTGTTGGCATGCTTGAGAAGCAGGCAAAAGTGGAGCGTTTCAGTATACACGAGGAACACATTCAGTGTATGCAGATAGATCTGAACGACAAAAAGAACAAGGTTTTGAGGTCATTTTTGAAGGCCTTGAAGAAATCTCCACCAGATGAAAATGCAATCCTTAAAGCTATGAGAAAATTCATGAATGTCAGTACTGAAGACCGCATTCACAATCATCATCACTTTGAGCGCATGGTAAGATATGATCCTGACAATGCTGACAAGTTAAGGAAGAATTTCCAGAATCATCTGAAACACATCAATGAGCAAGTAAACTTCACAATGACGCTGTTGTACAAGGTGCCAAAGATTGCTCGTAAATTCTTCTTAGAACTACCATCATGGGTACCCAAGCCACAACTGCCAACAGAGAAGCCGACGACGCAGGCCAAAACTGAAGCAGTGATGGATGAGGAGAAGATAGAGATGAAATCCAAAAACAAAGAGAGGGATGAAAACAGGCATACATCCAAGCACCATAAACATGACCATGTCAAGGATTTCCTGGGGATGTCTTCACAGAAGAAACAGAAGAAACACCACAAAAATTTAAGCAAGGAAGATGAGCCAGAGGATGAGGAATACTTTGAAGATCATCATTCCCCAGCCACATTTGCCGTTGTAATTGGGTTGAGCTGTGGTGCTTTAGTCATTATGGTTATCATCATAATTACCATGGCGATGCGAAGGTCGAGGAGGAACAACCCAACAAGGACCGTTCTTGTTGACCCTGATACGGATGGCAACACTGAAAAGCAACATCTTGCTAACTTACAGCAAAATGGGTATGAAAATCCCATCTACAAGCTCAGCAGCACTTACTAA

Transcript

alvinactis_v1_g10264

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02177	APP_N	Amyloid A4 N-terminal heparin-binding	Domain	Interproscan
PF03492	Methyltransf_7	SAM dependent carboxyl methyltransferase	Family	Interproscan
PF10515	APP_amyloid	Beta-amyloid precursor protein C-terminus	Family	Interproscan
PF12924	APP_Cu_bd	Copper-binding of amyloid precursor, CuBD	Domain	Interproscan
PF12925	APP_E2	E2 domain of amyloid precursor protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005299	Family	SAM dependent carboxyl methyltransferase	Interproscan
IPR008154	Domain	Amyloidogenic glycoprotein, extracellular	Interproscan
IPR008155	Family	Amyloidogenic glycoprotein	Interproscan
IPR011178	Domain	Amyloidogenic glycoprotein, copper-binding	Interproscan
IPR015849	Domain	Amyloidogenic glycoprotein, heparin-binding	Interproscan
IPR019543	Domain	Beta-amyloid precursor protein C-terminal	Interproscan
IPR019744	Conserved_site	Amyloidogenic glycoprotein, copper-binding domain conserved site	Interproscan
IPR024329	Domain	Amyloidogenic glycoprotein, E2 domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR036176	Homologous_superfamily	E2 domain superfamily	Interproscan
IPR036454	Homologous_superfamily	Amyloidogenic glycoprotein, heparin-binding domain superfamily	Interproscan
IPR036669	Homologous_superfamily	Amyloidogenic glycoprotein, copper-binding domain superfamily	Interproscan
IPR042086	Homologous_superfamily	Methyltransferase, alpha-helical capping domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23103	ALZHEIMER'S DISEASE BETA-AMYLOID RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0046914	Molecular Function	transition metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-