Gene detail

Detailed information of alvinactis_v1_g10033 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10033	PROTEIN ECT2	chr_5	1794689	1806336	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10033

ATGAGCGACGACAATTTAGCGGATTCCAACGAATCAAATTCACGTGTTAATGAAGTGCGAAGCTCTTCCAGTATGGAGACAAGGGTCTGTGTTGTAGGAAAGAAAAACATTGAAAATGAAGAACTCAGAAAGGCCCTGGAGGATTTAAAGCTCACGGTAATCACTACAGAAGACACCAAGGATATCTTAACGACTCTCAGTGATGATGTAGAGACAGTATTTGTTTGTGATCCCTTTGAAGGGGAAGACTTTCTTAATTTACACAAAGAAGAACAAAGAATCATTGGTCCACCAGTTGTACTATCTTGTGCTAAGAATAACCAGTCTCTACCATGTAATTCAAGGCCACTATACTGCTCTACCATGGCTAACCACATCATATGTTTCACTGGGTTCAAGAAGAAAGAAGAAATGGGTCGACTATGCAATTTGGTCCATCACATGGGTGGTAGTATCCGAGGGGAACTTAGTGGGCGTGTGACTCATTTGGTGGCATGTTCTGTTCATGGACACAAGTATGGGGCTGCCGTCAGCTTAGGAAAACCCATTATGACTGTAGAATGGATATATACTTGTTGGGAAAAGAGATTTGAATTGGATACATCTGCATCTAGTGAAGAAATGAGCAAGTTTAAAATGGCACCTTTTTATGGGCTGCTGTTCAGCTTTTATGGTTTCTCTGATGATGAGAAAAAACACATGGAAGAATCAACTGAGCaacaagGTGGTAAATATGTGAATGCAAGTGATGAAAACTGCACCCATGTGGTTGTTGAAGACAGCGTTAAAGAGTTACCTGCTGATATGAAAAGATCGGATAAAAGATTTGTTGTCAAACAAGAGTGGTTCTGGGCTAGTATCCATATGGATGGCTGTGCAGACGAGTCTCTTTATCCTTTCACCGCTACACCACGTGACCAAACGACAAGACAGAAGACTCCATCGAGCACAGGACGTAAGAGGAAGCGAAAGAAACTCAAAGAATCGGACATAAGTGATTTACTCTCTCCAGACTCTCCTCTCTTTAAAAACAAGAGGAAGAGTGGGGACTTGTTATCAGTCTCGGGGTCTCTACTCGACTACACGCTCTTATCGCCGGCCACGCCCGGACGAGGTGATGGAACACCAAGTGGAACTATTACCCCACTTAGCACCCCTAGGCCTCCCCCCACAGCAAGACAACAGGTTACCATGGAGTTACTCCAGACAGAGAGAAACTATGTAGCAATACTAACTACCATCCTCAAGGTGTTTAAGGAACCATTGGAGACTGACCCACGTGGTCCCATCATCCCTTCAGAGAGTATCAAAACCATATTTGGTAGTCTTCCCGACATCCTTGACGTCCATACGAAGATTATGGGTGAACTAGAAGCCATACTTGCTACCTGGTCAGAAAACCAATGTATCGGCCAAGTGATCCTTAACCACGCCGATGTGCTATGTAAAGTATATCCACCTTTTGTCAACTACTTTGAGATGAGCAAAGAAACAGTCACCAAACATGACAAAGAAAACCCTCGATTCCATGCCTTCCTAAAGGCTTGTCTCAGTAAATCAGAATGTAGTCGTCAGTCATTGGCTGAATTACTTATTAGACCCGTGCAACGATTACCCAGTATGAACCTACTGTTATCAGATATTCTTAAGAGAACTGACAAGAGTAACCCGGATTATATCACACTGATGCAAGCTTCTGACGCACTCAAGAACGTCATGATgcatatcaatgaagataaacgGAAGACTGATGGTCAGGTGCAGATGTTTGAGATACTACGAGATGTCGATGGATGCCCTGCGTACATCTTATCTTCACATCGTAGTTACGTAACAAAGGCCGATACCTTTGAACTGGGGGACGGTTTGTGTGGCAAAGGAGAACCAGTCACCATATTCCTATTTAACGACAGTCTAGAGATGACTAAACGACGTGCTCTTAAAATGAATCGTGCAATGAAAAGCCCCGCTGCCGCTAGGACCCCACAGAAGGCGTACAAACACGTGGAATTCATACCATTGTCTCATGTAAGAAGGGTCGTGGATATACGAGATAACGAAGACTGTCAGAATCTATTTGGTATCATCTATCGTGTTGCTAATGACATGAAAGAGAAGCTGTTGATGTTTCGATTGATTAGTGATGATATCAAGAAAGATGAATGGTTACATAAACTAACTATGGGCCTGGCAAATACTGCATGCACGGTTGACACTGAGAACTTTATTACAACTGTTGATCCTCAAGAACTGATGATAAGTAAAAGTGATTTCTCTACGGGTACCCTTAGTAGAGCTGTAAGAGTTGCTAAACGAACGACTAGGAAAGTAAGTCGTGCATTATCAATGAATAGAACACCCAGAAAGAACAGCTTAATCAGACGTTCATCGTCCAGTGTTACTCCAAAAGATAACGTTTTCTCTAGTCCCAATCCTCTTGTACCATCGTCAAAATACAACCAAAATCTACCGTTAGGAACACGGGGTCGAGCCATGAGTGTTTGCGAGGGACTGGATTCAGAGTTACTCGAAGTAGATGTGAAAGTTCGACGATCGATGTCGATCAGTGAGGAACGTTAA

Transcript

alvinactis_v1_g10033

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF00621	RhoGEF	RhoGEF domain	Domain	Interproscan
PF12738	PTCB-BRCT	twin BRCT domain	Family	Interproscan
PF21242	ECT2_PH	ECT2, PH domain	Domain	Interproscan
PF21243	ECT2_BRCT0	ECT2, BRCT0 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219	Domain	Dbl homology (DH) domain	Interproscan
IPR001331	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR001357	Domain	BRCT domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR026817	Family	Guanine nucleotide exchange factor Ect2	Interproscan
IPR035899	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR049395	Domain	ECT2, PH domain	Interproscan
IPR049396	Domain	ECT2, BRCT0 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16777	PROTEIN ECT2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000281	Biological Process	mitotic cytokinesis	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan
GO:0007399	Biological Process	nervous system development	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan
GO:2000431	Biological Process	regulation of cytokinesis, actomyosin contractile ring assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-