Gene detail

Detailed information of alvinactis_v1_g10009 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g10009	MONOCARBOXYLATE TRANSPORTER	chr_5	1335023	1355301	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g10009

ATGGAAATAATTGCGACTGAGATTCTTGTTCAAATCTTTGATTTCTTGTCCGCACCAGACAAGATACGTTTGTCTTGTGTTTGTAGTCGTCTTAGGAATGTCTTCATATCTACACCATATATTCATAGGAATACTTCATTCAAACACTGTTGGCACATTCGTGATGAACGACTCGTATACATGTACATTGACAAGAATAGGAATTCCATTCGCCACTTAGATTTGCAAGGTTGTTATTGGCTCAAGCAGTCAGACTTAGTGAAATGTCTGAAGAAATGCTCCAATCTTATTTCTCTGGATGTCAGAGGATGTAATGTATCAATACGTAACATGTTGCTATTGACTGAGAATCTTACAAAGCTTCAACACTTGGGCTGGAGTTCAATGGATCATATCAATAAACCAACACAACATTTACTTCATAACCTATGTTTTCAAAAACTGTCATCATTAAATATTGAAGTGAGAGGAGACCTGCGTACATGCATGTACTTAGACTCTGTTTACATGAACTTGGAGGTGAAAACTCTGAATATGAAGATCCTTGATCAAACATTAAGTTACACGTATAATCACCTTGCATTCCAAGTAAAATCTATTTCCTCATCCAAAAATGCTGACAATGTCCAAAAACGTCCATGTCTACTTCATGACTGTACAAGTCTTGTACTGTCAGGTCATTATTTGGGGGATTTTGTAGATTTGAACTCTTTGAATTGTTGCAATGGTAATCTCGAACTTAAGAACCTTGGAATTTCACATTTTATTATCAGGAATGCTATAAACTTTGAAGTCATAGAAACATTGCTGAGTTGTCCAACCCTGGAATACATGACTCTTTCACATATAACAACCTATCCACCTATGGAAACAATGAAGTTACTGTCATCAATCTCAAGTCATTGTCTGGAGACCATTAATTTACAGTCGTGTATTGTTGATAAGCTGGATGTTTTGGAGGTTCTAGTGGAAATGTGCCATAAGCTAAAACATCTCAACCTATTGGATATACATGGGAGCAGCACTAAGAGTCGGCCTTGTGAAACCATCAAAATCCTTTCAAAATGCAAAACTCTACAATCACTTGCTATAAATGCATGTTGTATCAGAACACACTTTGAGGACTGTGAGCAACTGCTAGGATCACAATTTGAGCAAACTCCCATAACAAATCCACTGTTGACATTGGTAGAGTCATGCAGCTATCTTACTGAGTTTGAATTGATTGGACAACGTTATCATTATGATCTTATGTTCAGAAAAGAGAGCCCAAACAATGAAACCAGACATGTAATTCCTATATCATCAGAGCAGCTAGCATCCATTTCACAGTGGAGTCATCTACAGAAACTGACCCTTGCAGGTTTTCGTGTTACTGGGAGTGGCAAATTTTTACTTCAAATTTGTCAAAATTGTACAGAGCTGAGGAGTCTGTCTTTGGCAAACTTAAAAGGCCCTATTCTAAGTCATTCAGGAAATGTGGCTTCTTTCAACACTGCTTTGACACACTGTCACAACCTCAGGGATTTCAGGCTTGAACAGCCATACTTCAACATAACCAAATCATTTCTAGAATCTGTACACAATGCACAACATCTAGAGAGAGTCTGTTGGAAAGTCAGAAATGGAAAACTGGCTGAAGATGAACTTGAGCCTTGGTTGGATAAGTGTACCAAGTTAATTTGTGTGCAAATATGTTGTGATGTGTCAAAGAAAGCAAGTAGAATACTGGAGAAAAACCTCATGTTAAAttcctattgttattcaaatcttgacctggttcagTTGATTAGAAACAAAATAGATTTCCAAGCTGTGCCGGTACGGGGTAACGTAGGGGATTTAGATTATGACTCGGCATTTCTGTGGAGTGTGAAAGACTATGTACAAACATGCAGTCCAAGCCAGCTGTTTCGCTACCGTTCTAAAGCGATAACAATGCTGTGCTGCAAAAAGAAATCATTGGACAAAAAACCCGAGCCTTTGGTGGAATATCCTGATGGAGGATGGGGTTGGATAGTGTGCTTGGCAACGTTCGTAACTCAGTTCATAGTGCTAGGGACGATGAACAACTTTGGAGTTATGTATGTGGAACTCCTGAAAGAATTCAAAGTAGGCAAGGCAGAGGCAGCATGGGTTGGGTCAATTACTTATGGTATGATGTTTCTCCTTGGACCTGTGGGTACCACACTATGCAAAAAGATTGGATGCAGACTTACTACCATCATAGGGTGCTGCATAGCATCAGTGGCATGCCTCCTAGGCTCCTTTGCTCCAAACATCTATGTAATGGACTTGACCTATGGCTTAATGTTTGGTGTTGGAGCTAGTTTTTGCTACTTCCCCACTGTCATCATCCTTGGTACGTACTTCAACAAACGACTCTCCCTTGCCAATGGTCTGACCTCTTCTGGTAGTGGTGTAGGATCACTTGCAATGGGGCCTATCATGCAGTGGTTGTTAAACCTCTTTGGAATGAGAAACACCATGCGCATATTTGCTGGTATGATGGCAACTATCATCTTGGTTGCATTCATATATAGGCCAATCAATACTCCATTTCTGAATGCCGACAAGTACAATCCCAAGAAGAAGGAGGCAGAAAAAAAGAAGAGCTGCTTGAGCTTCATTGATTTCAGTCTCTTCAAGAACAAGGCATATTTGATGTGGTGTGGTTCGCTGTCATTTTGGATGTTGGGATACTTTGTTCCTTTTGTGCATTTGATCCGTCTTGCCACTCTCCAAGGTGTTGATATGTTTAATGCTACACTTCTCATTGGAATGATGTCAGTGGGATCCACAGTAGGACGACTCTTCTTTGGCAAGATTGCAGATCACCCCAAAGTCAACAGGCTCTATCTGTATCAGTTTTCATTCCTTATGATTGGAATCAGCAATACCATATGTCCTCTCATGAAAACCTATGGTGGTCTTGCCTTCTATGCAACATTCTTTGGCTTCTTTGAGGGCTGTTATGTGTTGTTGGCTCCCGTTCTTACTGGCGACATTGTTGGACGAAATAACATGGCTACAGGTGTTGGAGTTCTGTTTGCTGTGAAGTCTATTCCTCTCACACTTGGGCCACCCATTGCAGGCTTTATCTATGATGCTTCTAACTCCTATGAAGTGGCTTTCTACATAGCTGGTGCAGTTCCAATTATAGCTGCATGTTTGATGTTTACAATCCCATTCCTGATGCCCAAAGAAGACCATCCTGACTGTACAGAATATGGTAAATTTGAAGTCATCATGGAAGAGAAAGATCATGAGAGTGAAGACAGAAGCTCTGGCTATGATTCTCAGCTTCGCATCCCACAAATGTCTGTTGAGCCACCAACGCCAACATTGCTACCAGAGTCCCTTAAAGCTGAATCTCTTCCATATCTTCCACCTCTGATTCATGATCCCAATGGACTATCTGGAGATCACACAGAAGCACATCTCATTCCTCTTCCCAGACGCCTACGCCCACATTCTATTTACAGTGTACGCAGTCTTACTGGATCACATCTTAGTGTTAATAGTATCTTAAGTAGAGCTGGACCAAGCACACTCACTTTGCCAGCAATACAAGAAAACGGCGATGGTAGCCGGTGTACTGTAAGAACTGCAGGTCTGCTTGACCTTCAAAGAGAACTTAGTCCATCAGTGTTTTCTCTAGTGAGAAGACGGTTGGACCTACACATGCCTAAGCAGGCTCCTACCCTTGCAGTACCCAAACTGATATCTGCAAGCAGGTATGGTGGAAGTATCGGGTGTATATCTGTTCCAGGAGATGCTGCTCCTATTGCATATGATCAAGCAGTTGCTGACATTGAAGAACAAGAAAAAGAAGTAATGATAGGAAATGTAACAAGTGTTTAA

Transcript

alvinactis_v1_g10009

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF19729	FBXL18_LRR	F-box/LRR-repeat protein 18, LRR	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR045627	Domain	F-box/LRR-repeat protein 18, LRR domain	Interproscan
IPR050327	Family	Proton-linked Monocarboxylate Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11360	MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008028	Molecular Function	monocarboxylic acid transmembrane transporter activity	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-