Gene detail

Detailed information of add.PMEG.utg000911l.1 in Placopecten magellanicus Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
add.PMEG.utg000911l.1	RIBULOSE BISPHOSPHATE CARBOXYLASE	contig0376	6317	7744	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

add.PMEG.utg000911l.1

ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAGGCTGGTGTTAAAGATTATAAATTAACTTATTATACTCCTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCACCTGAGGAAGCGGGGGCGGCGGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGACGGGCTTACCAGTCTTGATCGTTATAAAGGACGATGCTACCACATTGAACCCGTTGCCGGAGAAGAAAGTCAATTTATTGCTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTGTTTGGGTTTAAAGCCCTGCGAGCCCTACGTCTGGAGGATTTGCGAATCCCTCCTGCTTATACTAAAACTTTCCAAGGCCCGCCTCACGGGATTCAAGTTGAGAGAGATAAATTGAACAAGTACGGTCGCCCCCTATTGGGCTGTACTATTAAACCGAAACTGGGCTTATCCGCTAAGAATTATGGTAGAGCTGTTTATGAATGTCTCCGTGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTGTGCCGAAGCAATTTATAAATCACAGGCCGAAACAGGGGAAATCAAAGGACATTATTTGAATGCTACCGCGGGTACATGCGAAGAAATGATAAAAAGGGCTGTATTTGCTAGAGAATTGGGAGTTCCTATCGTAATGCACGACTACTTAACAGGGGGATTCACCGCGAATACTAGCTTGGCCCATTATTGCCGAGATAATGGTTTACTTCTTCACATCCATCGCGCAATGCATGCAGTTATTGATAGACAAAAGAATCACGGTATACACTTTCGTGTACTAGCTAAAGCGTTACGTATGTCTGGTGGAGATCATATTCACTCAGGTACCGTAGTAGGTAAACTTGAAGGTGAAAGAGAGATCACTTTGGGCTTTGTTGATTTATTACGCGACGATTTTGTTGAAAAAGATCGAAGCCGTGGTATTTATTTCACTCAAGATTGGGTCTCTCTACCGGGTGTCCTGCCGGTGGCTTCGGGGGGTATTCACGTTTGGCATATGCCTGCTCTGACAGAGATCTTTGGAGATGATTCCGTATTACAATTTGGCGGTGGAACTCTAGGCCACCCTTGGGGAAATGCACCCGGTGCCGTAGCTAATCGAGTAGCTTTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATTCGTGAGGCTAGCAAATGGAGTCCTGAATTAGCTGCTGCTTGTGAAGTATGGAAGGAAATTAAATTTGAATACGAGGCAATGGATACTTTGTAAATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAGGCTGGTGTTAAAGATTATAAATTAACTTATTATACTCCTGACTATGAAACCAAAGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCAGGAGTTCCACCTGAGGAAGCGGGGGCGGCGGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGACGGGCTTACCAGTCTTGATCGTTATAAAGGACGATGCTACCACATTGAACCCGTTGCCGGAGAAGAAAGTCAATTTATTGCTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTGTTTGGGTTTAAAGCCCTGCGAGCCCTACGTCTGGAGGATTTGCGAATCCCTCCTGCTTATACTAAAACTTTCCAAGGCCCGCCTCACGGGATTCAAGTTGAGAGAGATAAATTGAACAAGTACGGTCGCCCCCTATTGGGCTGTACTATTAAACCGAAACTGGGCTTATCCGCTAAGAATTATGGTAGAGCTGTTTATGAATGTCTCCGTGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTGTGCCGAAGCAATTTATAAATCACAGGCCGAAACAGGGGAAATCAAAGGACATTATTTGAATGCTACCGCGGGTACATGCGAAGAAATGATAAAAAGGGCTGTATTTGCTAGAGAATTGGGAGTTCCTATCGTAATGCACGACTACTTAACAGGGGGATTCACCGCGAATACTAGCTTGGCCCATTATTGCCGAGATAATGGTTTACTTCTTCACATCCATCGCGCAATGCATGCAGTTATTGATAGACAAAAGAATCACGGTATACACTTTCGTGTACTAGCTAAAGCGTTACGTATGTCTGGTGGAGATCATATTCACTCAGGTACCGTAGTAGGTAAACTTGAAGGTGAAAGAGAGATCACTTTGGGCTTTGTTGATTTATTACGCGACGATTTTGTTGAAAAAGATCGAAGCCGTGGTATTTATTTCACTCAAGATTGGGTCTCTCTACCGGGTGTCCTGCCGGTGGCTTCGGGGGGTATTCACGTTTGGCATATGCCTGCTCTGACAGAGATCTTTGGAGATGATTCCGTATTACAATTTGGCGGTGGAACTCTAGGCCACCCTTGGGGAAATGCACCCGGTGCCGTAGCTAATCGAGTAGCTTTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATTCGTGAGGCTAGCAAATGGAGTCCTGAATTAGCTGCTGCTTGTGAAGTATGGAAGGAAATTAAATTTGAATACGAGGCAATGGATACTTTGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00016	RuBisCO_large	Ribulose bisphosphate carboxylase large chain, catalytic domain	Domain	Interproscan
PF02788	RuBisCO_large_N	Ribulose bisphosphate carboxylase large chain, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000685	Domain	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Interproscan
IPR017443	Domain	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Interproscan
IPR020878	Active_site	Ribulose bisphosphate carboxylase, large chain, active site	Interproscan
IPR020888	Family	Ribulose bisphosphate carboxylase large subunit, type I	Interproscan
IPR033966	Family	RuBisCO	Interproscan
IPR036376	Homologous_superfamily	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Interproscan
IPR036422	Homologous_superfamily	RuBisCO large subunit, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0015977	Biological Process	carbon fixation	Interproscan
GO:0016984	Molecular Function	ribulose-bisphosphate carboxylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-