Gene detail

Detailed information of add.PMEG.utg000354l.2 in Placopecten magellanicus Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
add.PMEG.utg000354l.2	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	chrom13	19831617	19832795	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

add.PMEG.utg000354l.2

ATGGCTGACTCTGTAATCAGTTCATTCATGTCACGATTTGGTGAAATAGTGAACGGCTCAGTGAGACGCGGGAAAATTCGAGACACAGACATTGAAAACGGTACGAGATATATCCAGATTGTGAAATGCCAATCCCTTCTGCCTCTCACAACAATGTTTGGGAGATTCTCTGTACGCGTTTTCGCTGACAACAACAGGACCCCCTGCTTTAGGTGCAATCAGACTGACCACCCTTCTTACAGATGTCCACAGAGAGAGTATGCTGAGAGAAAATGCTTCCAGTGCGGACTTTCAGGTCATCTCAGCAACAACTGTCCTGAAAAAGAAAAGTTGTGCTACCGATGCAGACAACCTGGTCATCTCCAGCGAGATTGTTTACAAAATGCCAAAGATGCCTACGGTGAATATGTCCATGAGATACGAGAAGGTCAACGTGAGAATAGCTGTGACGACCGCGATGATACAGTGGCACTGACAGCCACAACATCTGCAACCACAGACAGTACTGTGGCCGAGGACCGTAATGATGAACGTGACACGCCCACCCCAGCTGTAGATCAAGACATAACTGTGAAAAGTGTGATAATCGGAGCGTCTAACTGCCGACGACTAGCCATTCCTAATGACAGTAAGGTAGTGAATGCTTCTATCTCCGGTGCAACATTTAACAACATAGAAGCGAACATAACAACAGCGCAAATGTCACTCGGCGAAAATGATGTTGACAAAATTATCATAAGCCTAGGTACAAACGACGTTACCAAACATCGAACCGACGGAGATTCTGTCACGATCAGCATCATGCACGCGCTTGACAAGGTGAAAGACGCATTTCCGGGAAAACAAATAGGTCTATGTGGTATAATACCAAGGAAGGGTAAGAGTCCCAACATACAAACAATCAACGCAACTGCAGTGACCGTTAACACTTTCATGGCCAAACTGTGTGTCCTTGACAAGTCGCGGACACTGTCTTACATCGATACTGCTAACGCGTTCATCCGTAAAGGAGTACCGATATGTGGACATATACGACTCGTCAGATGCATCCGGAATGCATATCAGTGTCGATGGAGCACACAAGTTGTGGTCAATCATGGAGGACTACATCATGGCTCCGCCCACATCGGCCAATGCATGGTCGACTCCAATGCAGTCCAGAAAACGTTTCCTCAGTAGATGGCTGACTCTGTAATCAGTTCATTCATGTCACGATTTGGTGAAATAGTGAACGGCTCAGTGAGACGCGGGAAAATTCGAGACACAGACATTGAAAACGGTACGAGATATATCCAGATTGTGAAATGCCAATCCCTTCTGCCTCTCACAACAATGTTTGGGAGATTCTCTGTACGCGTTTTCGCTGACAACAACAGGACCCCCTGCTTTAGGTGCAATCAGACTGACCACCCTTCTTACAGATGTCCACAGAGAGAGTATGCTGAGAGAAAATGCTTCCAGTGCGGACTTTCAGGTCATCTCAGCAACAACTGTCCTGAAAAAGAAAAGTTGTGCTACCGATGCAGACAACCTGGTCATCTCCAGCGAGATTGTTTACAAAATGCCAAAGATGCCTACGGTGAATATGTCCATGAGATACGAGAAGGTCAACGTGAGAATAGCTGTGACGACCGCGATGATACAGTGGCACTGACAGCCACAACATCTGCAACCACAGACAGTACTGTGGCCGAGGACCGTAATGATGAACGTGACACGCCCACCCCAGCTGTAGATCAAGACATAACTGTGAAAAGTGTGATAATCGGAGCGTCTAACTGCCGACGACTAGCCATTCCTAATGACAGTAAGGTAGTGAATGCTTCTATCTCCGGTGCAACATTTAACAACATAGAAGCGAACATAACAACAGCGCAAATGTCACTCGGCGAAAATGATGTTGACAAAATTATCATAAGCCTAGGTACAAACGACGTTACCAAACATCGAACCGACGGAGATTCTGTCACGATCAGCATCATGCACGCGCTTGACAAGGTGAAAGACGCATTTCCGGGAAAACAAATAGGTCTATGTGGTATAATACCAAGGAAGGGTAAGAGTCCCAACATACAAACAATCAACGCAACTGCAGTGACCGTTAACACTTTCATGGCCAAACTGTGTGTCCTTGACAAGTCGCGGACACTGTCTTACATCGATACTGCTAACGCGTTCATCCGTAAAGGAGTACCGATATGTGGACATATACGACTCGTCAGATGCATCCGGAATGCATATCAGTGTCGATGGAGCACACAAGTTGTGGTCAATCATGGAGGACTACATCATGGCTCCGCCCACATCGGCCAATGCATGGTCGACTCCAATGCAGTCCAGAAAACGTTTCCTCAGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00657	Lipase_GDSL	GDSL-like Lipase/Acylhydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001087	Family	GDSL lipase/esterase	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036514	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR051714	Family	CCHC-type Zinc Finger Nucleic Acid Binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0045182	Molecular Function	translation regulator activity	Interproscan
GO:2000767	Biological Process	positive regulation of cytoplasmic translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-