Gene detail

Detailed information of add.PMEG.utg000072l.102 in Placopecten magellanicus Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
add.PMEG.utg000072l.102	OS02G0815200 PROTEIN	chrom02	36714308	36715366	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

add.PMEG.utg000072l.102

ATGGACGACCAGGAGAATATCACTAACCTCATCATCAATTATCTGCCCCAGACGCTCACAGATGAGGAATTCATGTCAATGTTCCTCTCCATTGGCCCTATCAAGTCGGCTAAAATTGTCCGTGATAAAGCCACAAACTACAGTTTTGGGTTTGGTTTTGTGGAATACCACAGTCCACAGGATGCTGAGCGTGCAATCCAAACATTGAATGGTCTGCAGATCCAGAACAAGATCATCAAGGTAGCATTAGCACGACCAGGTGGTGAGGCATATAAGGGAGCTAACTTGTACGTCCGGAACGTCCCAAAACATTACAAGGAGGTCGATCTAGAAGCACTCTTTGATGGATTTGGTGCTGTTGTGCAATCTCGCGTTCTAATCGACCTGAATACAGGCGAATCTAAGGGTGTTGGATTTGTGCTGTATAGCAAGAAGTCTGAAGCTGAGGAAGCCATTTTGGGGATGAATGGAAAGTCTCCGTGTGATGGTGAGGTTCCACTGATCGTTAAATTTGCTGATGATAACACGAAGAAACAGCAACAGAACATGACTGGTCAGCGCTACAGCCAACAGTCGACGGGTGGGGGCCAGGCCGGCCCAATGAGGAACCCCCCAGGTAACAGGATGAGGTTTAACCCAATGGGTGGTCCAGCAATGAACAATTATAGTAGCCCAAACATGAACTATGGAAACATGTATAGTTATGGTGCACCCCAGGGTCCCCATGGATATGGCGGGGGCGTGGGAGGGGGTAATAATTACGGAGGAGCCCCAGTTTCTGGGAACCCTCTGGGTACAAGCCACTTAGCACCTGGGGGTGGATACATTATATATGCATACAACATTGGATATGATTGCACCGAGAAAGAGCTTGCAGAACTGTTTGCTGACTTTGGAACTGTGTCAAAGGTCAATGTGATATATGACCACCAGAGAGGCCAGTGTAAAGGATATGGATTTGTTACCATGACAAACTATCGCGAGGCACAGAACGCTATACTCAATCTCAACAGTTATGTCCACAAAGGGAGACAACTTGCCATATCTTTCAAAAAGTGAATGGACGACCAGGAGAATATCACTAACCTCATCATCAATTATCTGCCCCAGACGCTCACAGATGAGGAATTCATGTCAATGTTCCTCTCCATTGGCCCTATCAAGTCGGCTAAAATTGTCCGTGATAAAGCCACAAACTACAGTTTTGGGTTTGGTTTTGTGGAATACCACAGTCCACAGGATGCTGAGCGTGCAATCCAAACATTGAATGGTCTGCAGATCCAGAACAAGATCATCAAGGTAGCATTAGCACGACCAGGTGGTGAGGCATATAAGGGAGCTAACTTGTACGTCCGGAACGTCCCAAAACATTACAAGGAGGTCGATCTAGAAGCACTCTTTGATGGATTTGGTGCTGTTGTGCAATCTCGCGTTCTAATCGACCTGAATACAGGCGAATCTAAGGGTGTTGGATTTGTGCTGTATAGCAAGAAGTCTGAAGCTGAGGAAGCCATTTTGGGGATGAATGGAAAGTCTCCGTGTGATGGTGAGGTTCCACTGATCGTTAAATTTGCTGATGATAACACGAAGAAACAGCAACAGAACATGACTGGTCAGCGCTACAGCCAACAGTCGACGGGTGGGGGCCAGGCCGGCCCAATGAGGAACCCCCCAGGTAACAGGATGAGGTTTAACCCAATGGGTGGTCCAGCAATGAACAATTATAGTAGCCCAAACATGAACTATGGAAACATGTATAGTTATGGTGCACCCCAGGGTCCCCATGGATATGGCGGGGGCGTGGGAGGGGGTAATAATTACGGAGGAGCCCCAGTTTCTGGGAACCCTCTGGGTACAAGCCACTTAGCACCTGGGGGTGGATACATTATATATGCATACAACATTGGATATGATTGCACCGAGAAAGAGCTTGCAGAACTGTTTGCTGACTTTGGAACTGTGTCAAAGGTCAATGTGATATATGACCACCAGAGAGGCCAGTGTAAAGGATATGGATTTGTTACCATGACAAACTATCGCGAGGCACAGAACGCTATACTCAATCTCAACAGTTATGTCCACAAAGGGAGACAACTTGCCATATCTTTCAAAAAGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR006548	Family	Splicing factor ELAV/Hu	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-