Gene detail

Detailed information of XP_032906835.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032906835.1	DNA-BINDING PROTEIN SATB FAMILY MEMBER	NC_045957.1	98078268	98219719	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032906835.1

ATGGTGAGCATGGAAAAACCCAGTGAAACAGTGCAAGTGAAGGAGAATTCAGAAAAAAGCAACAATCTCATTGATCCTAAAAGTCCCCCGGCTAAGATCCCCCGCTTGGAGCAGAATGGAAGTCTCTCCACCCGCAGCAGACTGGGTAGCATGGGTGCCAAAGTGACTGGAGGCTCACCCAAACACATGGGCCAGCTGGTGAAAATCGGTAATAAAAAAGGAAATATGCTCCCTGTTTTCTGTGTGGTGGAACATTTTGAAAGTCCCATTGAGTATGAAAGTAAAGAAGAGCATGCAGAGTTTGTTCTGGTACGGAAGGACATGCTGTTTAACCAACTAGTGGAGATGGCACTGCTTTCTCTTGGATATTCCCATAGTTCCGCAGCACAGGCAAAAGGCCTGATCCAGGTTGGGAAATGGAATCCAGTCCCTCTCTCATATGTGACAGATGCACCGGATGCCACAGTAGCAGACATGCTGCAGGATGTGTATCATGTGGTCACACTGAAAATTCAGTTGCACAGTTGCCCAAAACTGGAAGACTTGCCACCTGAACAGTGGACACACACAACAGTCAGAAATGCTCTGAAGGAACTACTGAAAGAAATGAACCAGAGCACACTGGCAAAAGAATGCCCCCTCTCCCAGAGTATGATTTCCTCCATTGTAAACAGCACTTACTATGCAAATGTATCAGCAGCAAAATGTCAAGAATTTGGAAGATGGTATAAACATTTTAAGAAGACGAAAGACATGTTTGCTGAAATGGAGACCATGTCTGAATTGTCTATTTCACAGCCAGGAACAAATCATGTAAACTTTGGAACACAAACACTTCCTAGGAATGGTACTGATCTGCCCCAGCCACCGTCACCTGCTCAACTTCCCCACAGTGGCCAGCCAACTACCAGGCCCCAGCTTTCTAATTTGCATCCTGGACTTGTCTCTGCACCTCTTAGTCCACAGCTGGTGAACCAGCAGCTGGTTATGGCCCAGATATTAAACCAACAATTTGCTGTCAATAGACTTCTGGCACAGCAGTCCCTTAATCAGCAATACCTAAATCACCCTCCGGTCAACCGATCAATGACTAAACCATTAGAACAACAGCCTTCATCAAATGCTGAAGTGTCTACCGAAATCTACCAGTGGGTTCGTGATGAGTTGAAGCGAGCTGGCATCTCCCAAGCAGTGTTTGCTCGTGTGGCTTTCAACCGAACTCAGGGTCTACTATCTGAAATACTCAGAAAGGAAGAGGACCCCAAGATTGCCTCACAGTCTTTGTTGGTCAATTTGAGAGCAATGCAGAATTTTCTAAACCTTCCTGAAGCAGAAAGGGACCGTATTTACCAGGATGAAAGGGAGAGAAGCCTCAATGCAGCCTCAGGGATTGGAACTGCACCTTTGATAAGTTCTCCTAACCGTACCCAACAGGTCAAAACATCGTCCATTACAACTGAGTGGAATGGTAAATTGGAAGGCTGTGCATTTAATATTAATGCTTCCATTTACGATGAGATTCAGCAGGAAATGAAGAGGGCCAAAGTGTCCCAAGCACTATTTGCTAAGGTTGCAGCAACAAAGAGCCAGCCACAACCAGCAACACCCCGACTTGCACCGAAACAGCCAACATCAACACCAACAGAAGCAGAAGATGAAAGCCGTCATAAGCTCAGATCTCGCACTAAGATTTCTGTTGAAGCCCTGGGAATATTGCAGAGCTTTATACAGGATGTAGGTTTGTACCCAGATGAAGAAGCAATTCAGACTCTGTCAGCTCAACTTGACCTGCCCAAGTACACAATTATAAAGTTCTTTCAAAACCAACGTTACCATCTCAAGCATCATGGCAAGCTGAAAGACCATGCAGGTTTGGAGGTAGACGTGGCAGAATATGAAAAAGAAGAGTTGCTGGAGGACTCTGAGGACTCAGAAGAAAGTGATGGAGGTAAAAGTTCAAAAGAAATATATTCAGTTAAAGTAGAAGAGACCTTACAGGGAGAAGGGACTACAAATAACTTAGATTCTAATCAGGAACCAAATGACTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Transcription Factors Family	CUT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF02376	CUT	CUT domain	Domain	Interproscan
PF16534	ULD	Ubiquitin-like oligomerisation domain of SATB	Domain	Interproscan
PF16557	CUTL	CUT1-like DNA-binding domain of SATB	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR003350	Domain	CUT domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR032355	Domain	SATB, CUT1-like DNA-binding domain	Interproscan
IPR032392	Domain	SATB, ubiquitin-like oligomerisation domain	Interproscan
IPR038216	Homologous_superfamily	SATB, CUTL domain superfamily	Interproscan
IPR038224	Homologous_superfamily	SATB, ULD domain superfamily	Interproscan
IPR039673	Family	DNA-binding protein SATB1/SATB2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15116	DNA-BINDING PROTEIN SATB FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-