Gene detail

Detailed information of XP_032906820.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032906820.1	SNF2/RAD54 HELICASE FAMILY	NC_045990.1	8992414	9066232	+

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032906820.1

ATGTCCACTCCGGACCCTCCGATGGGAGGCACACCTCGCCCAGGGCCCTCCCCGGGACCAGGCCCCTCGCCGGGCTCCATGCTGGGCCCCAGCCCCGGCCCCTCGCCCGGCTCGGCACACAGTATGATGGGCCCCAGCCCTGGGCCCCCATCCTCTGCTCACTCCATGACACCTCAGGGACCCGGGGGATACCCTGCGGAGAGCATCCATCAGCTTCATAAGGCGATGGAGTCGATGCACGAGAAGGTGATGCCCGAGGATGCGCGCTTCAGTCAGATGAAGACCATGGGCATGAGGCCAGGCGCAAACAGCGGGATGGGACCACCACCCAGCCCCATGGACCAGCATTCACAAGGTTACCCCTCTCCTCTGGGGGGTCCCGAGCATGCCCCCAGCCCCGTGCCCGCCAACGGCCCGCCGTCGGGACCACCCATGCCCACCGGACCAGGGGGTCTCCCCATGGATGGAGGGGAGATCCAGAGCGTGGGGCAGCAGAACCGTGGACCCTCGCCATTCAACCAGGGCCAGCTTCACCAGTTGCGGGCACAGATCATGGCGTACAAGATGCTGGCGAGAGGGCAGCCCATCCCGGACCACCTCCAGCTGGCAGTGCAAGGGAAGAGACCCCCACCTGGAATGCAGCAGCAGATGCAGTCTCTACCTCCCCCCTCCATCCCCGTCACTGGAACAGCGTCTGTCCCTGCACCAGGGAACTACAACAGGCCACTCGGCATGGCAGGATCCAACATGATGCCCCCTGGATCTGCTGGGGTCAACCAGGGAATGCAGTGCCAGCCACCCAGTGGCCCGTGCAAACCCTGGCCGGAAGCTCCCATGGCCAACGCCACGACCCCCACCACAGCCCCGCAGAAGTTGGCACCCCCGCAGGCCACGGGCCGCCCTTCGCCCGCCGCGCCTGCCGTGCCCCCCGCCGCCTCTCCGGTGATGCCTCCCCAGACGCAGTCGCCGGGGCAACCCGCCCAGCCCCCCCCCATGGTGCATCACCACCAGAAGCAGAACCGCATCACTCCCATACAGAAGCCTCGAGGCCTCGACCCCGTCGAACTGCTGCAGGAGCGCGAATACCGGCTGCAAGCACGGATCTCCCATCGGATCCAGGAGTTGGAAAACCTCCCCGGTTCACTGGCAGGAGATCTCCGCACCAAAGCCACCATCGAGCTCAAGGCCCTGCGGCTCCTTAACTTCCAGAGGCAGCTGCGCCAGGAGGTGGTGGTGTGCATGCGGAGGGACACCGCGCTGGAGACGGCGCTCAACGCCAAAGCCTACAAGCGCAGCAAGCGGCAGTCGCTGCGCGAGGCGCGGATCACAGAGAAACTGGAGAAGCAGCAGAAGATCGAGCAGGAGCGGAAACGCCGGCAGAAGCACCAGGAATACCTCAACAGCATCCTGCAGCATGCCAAGGACTTCAAAGAGTATCACCGCTCCATCACAGGCAAGATGCAGAAGGTGACCAAGGCCGTGGCCACCTACCACGCCAATACCGAGCGCGAGCAGAAGAAGGAGAATGAGCGCATCGAGAAGGAGAGGATGCGCAGGCTGATGGCGGAGGATGAGGAAGGCTACCGCAAGCTGATCGACCAGAAGAAGGATCGGCGTCTGGCCTACCTGCTGCAACAGACGGACGAGTACGTGGCCAACCTGACGGAGCTGGTGCGGCAGCACAAGGCAGCCCAGGCCGCCAAGGAGAAGAAAAAGAAAAAGAAGAGGAAGAAGCCGGAAAACGTGGACGGCCTGGGCTCAGTGGTCGGCCCTGACGGTGAGCTGCTGGACGAGACGAGCCAGATGAGTGACCTGCCGGTGAAGGTGATCCACCTGGAGAGCGGCCGCATCCTGTCCGGAGCCGAGGCCCCCAAGGCCGGACAGCTGGACACCTGGTTGGAAATGAACCCTGGGTACGAGATGGCCCCCCGCTCCGACAGTGAAGACACTGGGTCTGAGGAGGAGGAAGAAGACACGACAGACTGCGGGCCGCTAATCCTGTTGGAGGACCGGTCTCGTTCGGGACAGCTGGAAGAGGAAGAGGAGGAGCAGGCCGCCACCTCGGCGTTGCCTGCTGCTCCCGAGGAGACGAAGAAGATTCAAGATCCGGACAGCGAGGAGGTGTACGAGATGAACGCCAGGCAGATCATCGAGAACGCCAAGCAGGACGTGGATGATGAGTACAGCGCGCCGCTCTCCAGTATACGCGGGCTACAGTCCTACTACGCAGTGGCCCACGCGGTGACTGAGAGGGTGGATATTCAGTCCACGCTGCTCGTGAACGGGTTACTGAAACAATATCAGGTCAAGGGTCTAGAGTGGCTCGTGTCGCTGTACAACAACAACCTGAATGGCATCCTGGCCGATGAGATGGGTTTGGGGAAGACCATTCAGACCATTGCCCTCATCACCCACCTCATGGAGCACAAGCGCATCAACGGACCATTCCTCATCATCGTGCCTCTCTCAACTCTCTCAAACTGGGCTTACGAGTTTGACAAGTGGGCACCGTCCGTATCACGGATCTCCTACAAGGGCTCCCCTGCTGCTCGAAGGGCCTTTATCCCGCTGCTTCGCAATGGCAAGTTCAATGTCCTGCTCACCACCTACGAATACATTATCAAGGACAAGCACGTCCTTGCCAAGATCCGTTGGAAGTACATGATTGTAGATGAGGGGCATCGGATGAAGAACCATCACTGTAAGCTGACGCAAGTGCTGAACACTCACTACGTGGCTCCACGCCGCCTCCTGCTGACCGGCACGCCGCTGCAGAACAAGCTGCCCGAGCTCTGGGCCCTCCTCAACTTCCTGCTGCCCACCATCTTCAAAAGCTGCAACACCTTCGAGCAGTGGTTCAATGCCCCCTTTGCCATGACGGGCGAGAAGGTCGATTTGAACGAAGAGGAGACGATCCTGATCATCCGGCGATTGCACAAGGTCCTCCGGCCCTTTCTGTTGCGGCGATTGAAAAAGGAGGTGGAAGCACAGCTTCCTGAGAAGGTGGAGTACGTCATTAAATGCGACATGTCGGCATTGCAGAGGGTGCTGTACCGACACATGCAGGCCAAGGGAGTGCTGCTCACCGATGGCTCGGAGAAGGACAAGAAGGGCAAAGGCGGCACCAAGACTCTGATGAACACCATTATGCAGCTGAGGAAGATTTGCAACCACCCGTACATGTTCCAGCAGATTGAGGAATCCTTCTCAGAACACCTGGGATTCACAGGAGGCATTGTGCAAGGGGCTGACCTTTACCGGGCCTCGGGAAAGTTTGAGTTGCTGGACCGGATCCTCCCCAAACTGCGGGCGACGAACCACAGAGTGCTGCTCTTCTGCCAGATGACCTCGCTCATGACCATCATGGAAGACTACTTCGCCTACCGCAGCTTCAAGTATCTCCGGCTGGATGGGACGACCAAGTCTGAGGACCGTGGGATGCTCCTGAAGACCTTCAATGAGCCCAACTCGCACTACTTCATCTTCTTGCTAAGTACGCGGGCAGGGGGCCTGGGCTTGAACCTGCAGGCCGCTGACACCGTCGTCATCTTCGACAGCGACTGGAACCCGCACCAGGATCTGCAAGCTCAGGATCGTGCTCACCGCATCGGGCAGGTGAATGAGGTGCGTGTGCTGAGGCTCTGCACCGTCAACAGCGTGGAGGAGAAGATCCTGGCCGCGGCCAAGTACAAGCTCAACGTGGACCAGAAGGTCATCCAGGCGGGCATGTTCGACCAGAAGTCGTCCAGCCATGAGCGGCGAGCCTTCCTGCAGGCCATCCTGGAGCACGAGGAGCAGGATGAATGCGAGGTTGTGGCAGCGGAGGTGAAAGGATCGGAAGGACAACCTGAAGAAGACGAGGTTCCTGATGATGAGACGGTGAACCAGATGATAGCCAGGCACGAGGAGGAGTTCGACCTGTTCATGCGGATGGACCTGGACCGGAGGCGTGAGGACGCCCGCAACCCGAAGCGGAAGCCGCGGCTGATGGAGGAGGATGAACTGCCCAACTGGATCCTGAAGGACGATGCGGAGGTGGAACGCCTGACCTGTGAGGAGGAGGAGGAGAAGATGTTCGGCCGAGGCTCACGGCAGCGCAAGGAGGTGGACTACAGCGACTCTTTAACCGAGAAACAGTGGCTCAAGGTAGCCATAGAAGAGGGCAACCTGGAGGAGATTGAGGAAGAGGTGCGGCAGAAGAAGGCCCGCAAGCGCAAGCGTGACGTGGACCCCCCGGTGGTCATGGCGACCACCAGCACACGCAGCCGGGACAAGGATGACGACGACAAGAAGAAGAAGAAGCGTGGCCGTCCGCCCGCCGAGAAGCTGTCCCCAAACCCGCCCCACCTCACCAAGAAGATGAAGAAAACCGTGGAGGCCGTCATCAAATACAAGGACAGTACTGGCCGACAGCTAAGTGAAGTTTTCATTCAACTCCCATCCCGCAAGGAGCTCCCAGAGTATTACGAACTCATCCGCAAACCGGTCGACTTCCGGAAGATCAAGGAGCGGATCCGTAACCACAAGTACCGCAGCCTCAACGACCTGGAGAGAGACGTGATGCTGCTGTGTCAGAACGCACAGACCTACAACCTGGAGGGTTCGCTGATCTATGAAGATTCCATTGTGCTGCAATCCGTGTTTACCAGCGTGCGGCAAAAAATTGAAAAGGAAGAAGACAGCGAGGATGATAGTGAGGAAGGAGAGGATGATGAAGAAGAAGGATCCGAGTCAGAATCTCGATCGGTGAAAGTGAAGATTAGGCTGGGCCGGAAGGAGAAGAGCCAGGATCGAGTGAAGGGGCGGAAACGCTCTAGTCGCGCATCGAAGTCCAAACCTATTGTAAGCGATGATGACACGGAGGAGGAAGTGGATGAGGAACGGTCCGGAACTGGTACAGATGAAGATTAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF07529	HSA	HSA domain	Family	Interproscan
PF07533	BRK	BRK domain	Domain	Interproscan
PF08880	QLQ	QLQ	Domain	Interproscan
PF14619	SnAC	Snf2-ATP coupling, chromatin remodelling complex	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001487	Domain	Bromodomain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR006576	Domain	BRK domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014012	Domain	Helicase/SANT-associated domain	Interproscan
IPR014978	Domain	Glutamine-Leucine-Glutamine, QLQ	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029295	Domain	Snf2, ATP coupling domain	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR037259	Homologous_superfamily	BRK domain superfamily	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10799	SNF2/RAD54 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-