Gene detail

Detailed information of XP_032906621.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032906621.1	ZINC FINGER RNA-BINDING PROTEIN	NC_045990.1	2697877	2743058	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032906621.1

ATGCGTCCCATGCGTATTTTTGTCAATGATGACCGGCATGTAATGGCAAAACATGCAGCCATCTACCCAACTCAAGAAGAACTGGAAGCAGTGCAGAATATGGTGTCACATACTGAACGAGCATTGAAGGCCGTTTCTGACTGGTTGGATGAGCAGGAGAAGGCCAATTCTAAACCTGAAGTCACTGAAGAAACTGAGGAGCCTGCAACAGAGGGAGAGAACAAGGAAGGAATGGAAGACCATGACAACTTTACCATGGAACAGAAGTCTACAGATCTAAATGCCAGCCGGACCCTACGAGGTGTGATGCGAGTTGGGCTGGTTGCCAAAGGACTTCTTCTGAAAGGAGATCTTGACCTGGAACTTGTACTGTTGTGCAGGGATAAGCCGACTAAATCGCTGCTGACCAAGGTCAAAGATAATCTGGCTGTACAATTAGCGACCATCACTAAGGAAAAGTATGAAATAGATCCTTCAGAACAAGATGCAGCGATTATTATAAAGAATGACAAAGAGGAACCACTAACCCTGAAGATTAAACTGACCTCTCCTCTGGTCCGGGAAGAACTCGAGAAGGAGGCTGCTGGAGAAACAGTAACGATGAGTGAGCCTGCGGATGTATTGGACAGGCAGAAATGCCTAACCGCCTTGGCGTCCCTGCGACACGCCAAATGGTTCCAGGCCAGAGCAAATGGGCTGAAGTCATGTGTCATTGTCATCCGAGTTCTCCGGGATTTGTGTTCAAGAGTACCCACATGGGCACCACTTAAAGGATGGCCGTTGGAGTTGATCTGTGAAAAAGCTATTGGAACTGCAAATAGGCCTTTAGGTGCGGGAGAGGCAATGAGAAGAGTCCTGGAATGTCTAGCTTCAGGAATTTTAATGCTTGATGGACCTGGGATCTATGATCCATGTGAAAAGGATGCTATTGATGCTGTTGGTGCTTTTACCAGACAACAAAGAGAGGACATAACACAGAGCAGTCAGCATGCCTTGAGGCTGGCTGCCTTTGGACAGTTGCACAAGGTATTGGGAATGGATCCATTACCTTCTAAGCTCCCTAGAAAACCGAAAAATGAAAATCCAGTGGATTATACAGTTCAGATTCCTCCAAGTGCATTCAGCACCCCAGTGAAGAGGCCAATGGACGAAGACTCCGGTGAGGACAAGTCTCCAAACAAAAAGAAAAAGAAGACCCAAAAGAAAGCAGCAGAAGAAAAGATTGAGCCAGCCCAAGCTATGAATGCATTGATGAGACTTAATCAACTACGGCCAGGTCTTCAATACAAATTAATCTCTCAGACTGGTCCTGTCCATGCTCCAGTATTCACCATGTCTGTGGAAGTGGATGGAAAGAACTATGAAGCATCAGGCCCATCTAAGAAAACTGCCAAACTTCATGTAGCCGTCAAGGTTTTGCAAGATAAAGGTCTCCCAACAGGAGTGGAACCTGAGAAAATTGAAGAATTGATTAAAGTGGAACCCAAGCCTGTTGTTCCAGTCCCTGCAGCAGTGACTGTAAAACCACTCGTCGTAACTCCTGAGCCTGAGAGCACACGTCAGCAAGGTCCAATCTTGACCAAACAAGGGAAAAATCCAGTGATGGAGTTGAATGAGAAGCGCAGGGGGCTTAAATACGAATTAATATCTGAGACGGGTGGCAGTCATGACAAGAGGTTTGTTATGGAGGTTGAAGTTGATGGTCAGAAATTTACAGGCTCAGGTTCCAATAAGAAAGTGGCAAAAGCCCATGCTGCACTCGCTGCCCTGGAAAAACTTTTTCCCCACCAGCCTCCCATGGAAGTAAAGAAAAAACGAATTATTCAGCCACAGCAGCATAATATGGGATTTGGTGGTGGCATGAGCATGGGAGTGCTTCCGGCTGGACCTCCAGCAGGCCCTCCTGTACTAAGAGGTAGAGGCAGGGGACGTGGAAGAGGTGGCAGAGGTGGTTTCAATGCTTCCAACAATTCTGGTTACTTGTCTTCAGGGACTGGTTATGGTGGGGGAAGCTATGGATATGGTGGAGGAGGAGGAAGTGGTGCCAACTATGGTTATGGATCCTCTAATTCTTCAAGTGGATATGGAATGTCAATATGTCCAAGTTGGAATGATGGTTTTGAAGAGCCCAATTGGAACAATTCCAATTATAACACTTGTAACTACTACAACAGTGGCAGCTACTCCGGTTCAGGCACTTCAGGAGGGTACTCTTATAGCCAGAATGATGGCTATAATACCCCTCCACCAAAGAAGCCAGCCAAGCCACAGCCCTCGCTACAGAAATCATCGTACAGCGGTGGAGGAGGAAGTGGCGGCAGTGCCAGTGGTGGTGGTGGTGCCGCCGCCGGTAGTGGTGGCGGTGGTGGTGGTGGTGGTGGCGGAGGCGGCAGCGCCGGTGGCAGCGGATACCAGTCTCCACCGTCCACCTACAGCCAGGGCCAGTACACCAGCTACAGCCAACCCCCACTTTCAGCCCCACCAAAGTCAAAAGCCTACAACAGTCAAAATTACTCGTATTCAGGATCCTCCTACAGTAGTTCCTATCCAAGTCAGAATCTTGGTGCTAATGCGGAATATGAACGGAAAGGTGGATACACTAGTTCGACGTATGGTTCTGGTGGCGGTAATTCATATGGTGCTTCCAGCACATCAGGTTATGGAGGAGGCGGAAATACTGGCGGCTCTTATGCTGGATACTCATCCCAGAGTGGCTATAATGCACCAATATCTGGAGGATATGGTTCCGGTCAGTCGTCCTATTCGAGCCCTGGTGGGGGCTATAGCCGAGGGGACCACATGAACACCTATCAATACAGATAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF07528	DZF_N	DZF N-terminal domain	Domain	Interproscan
PF20965	DZF_C	DZF C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006561	Domain	DZF domain	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR033099	Domain	Interleukin enhancer-binding factor 3, first DSRM	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR049401	Domain	DZF domain, N-terminal	Interproscan
IPR049402	Domain	DZF domain, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45762	ZINC FINGER RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-