Gene detail

Detailed information of XP_032906555.1 in Amblyraja radiata Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
XP_032906555.1	ADAPTIN, ALPHA/GAMMA/EPSILON	NC_045989.1	20132879	20175505	-

Gene Structure

More details in Jbrowse Sequence

CDS

XP_032906555.1

ATGAGCGACGTCATGGAGAAGACGCTGTCGGCGCTGCCCAGCCTCCTGTCGCTGGAAGGCGGCGCCGGCATCACGGCCGCGTCCCGGCTCGGCGGCTTCATCCGCGGCCTCACCGAGCTGGCGTCCAAACAGGATGAGGAGAAACTGATCAAGAAGGAATTGGCTGCGTTAAAAGAACAGGTCTCTGCTCCCACCACATCTCCGAAGCAAATGTGGGAATGTTTGGTGCGTCTGATCTACTGTGAAATGCTGGGGTACGACGCCTCCTTTGGATACATACACGCAATCAAATTAGCTCAGCAGGGCAGCCTGATGGAAAAAAGAGTTGGCTACTTGGCCGTTTCTCTCTTTCTAAATGAGGGACACGAGTTGCTGCTGTTGCTTGTGAACACCGTCCTAAAGGATCTCCAGAGCACTAACCTTCTTGAGGTTTGCATGGCTTTGACTGTTGGCAGCCAGCTTTTCCCACTGGATATGATCCCTGCCGTTCTTCCTCTGGTTGAAGAGAAGCTTCAGCATTCAAAGGAAATGATAAGAAGAAAAGCAGTGCTTGCGCTGTATAAGTTCTATCTTATTGCTCCAAATCAAGTTCAGCACATTCATGACAAGTTTAAGAAAGCTCTGTGTGACAAGGATCCTGGAGTTATGGCTGCCTCTCTTCACATCTACCTTCTGCTGATTAAGGAAAATCCAGATGGCCATAAAGATTTAACTGGGAGCTTTGTAACTATTCTTAAGCAAGTGGTTGGCGGGAAGCTTGCAGTGGACTTCAACTACCACAGTGTGCCAGCGCCCTGGCTACAGATCCAGTTGCTGAGGATTTTAAGATTGTTGGGAAAAGATGATCCAGTAACTAGTGAATTAATGTATGATGTTCTTGATGAATCTTTACGAAGAGCCGATCTGAACCACAACATAACCTATGCAATATTGTTTGAGTGTATTCAAACAATATATACCATTCATCCAAAGTCAGAATTGTTGGAGAAGGCAGCAAAGTGTACTGGAAAATTTATCTTATCACCAAAAAACAACTTAAAATATCTAGGATTAAAAGCACTCACATACGTAATCCGGCAAGATTTGAATCTAGTTCTTCAGCACCAGTTGACAATAATTGAATGTTTAGATCACTCTGACCCGATTATAAAGAGAGAGACGCTAGAACTGCTCTACCGAATTACCAATGCACAAAACGTAGCTGTTATAGTGCAGAAACTGCTGGACTACTTGAGACAAAGCAAGGACGAATACATCACCATCAATTTAGTTGGCAAAATAGCACAACTTGCAGAACAGTATGCTCCCAGTAACGAGTGGTTTATACAAACCATGAACACTGTGTTTGCAGTTGGCGGAGATATGATACAACCGGAAATCCCAAACAACTTCTTGAGACTCCTGGCTGAAGGATTTGATGATGAAGTGGAGGACAAGCAATTGAGACTCTATGCAGTGAATTCCTACCTTGCCCTTTTGGAAAAGCCCAAAGCACAATATCCCCTGAAATTCCTACAGGTTATGAGCTGGGTGCTGGGAGAATATTCCTACCTCAAAACAGAAACCAAACCAGAAGACGTCATACAGAAGTTACATTGTTTACTGGGAAAATGTGCTGCAAATTTGGAAACAAAAGCTTGGATCTTGAGTGCGATTACCAAACTCTATCGTCTGACACTGAATGTCAAAGCAATACCTGAAATCATGCAACGTTTTGGGAATTCAATGGATCCTTGTTTGAGACAAAGTTGTTTTGAGTTGAAGCAATTTATTGAGAACAGAGAGATGATGACCTCAGTTTTACCGCTGAATGCAAGTTGTGATGATATAGTGGTTGATGCTTCGCTCTCTTTTCTGGATGGTTTTGTTGCCGATGCGTTGGGTCGCGGAGTTGCACCGTACAAGCCGCATCATCAAAGACAAGAAGAGAAATTGGCTCAAGAAAAAGTGTTGAATTTTGAACCTTATGGACTATCTTTTCCAACAAGCCCACATACCTCCAGTGTTACAGGAAGACAATCCCCTGCAGACTTGTCCTTACATTCAGAGATTTCTTACAACAGCACAGAATCTGGATTAAAAGATTCAGAGGGTCTGAAACTTGAAGGGGTGAAGAAAGTGTGGGGTACGAAGGGCTACCTTCGAAGCAAGGAATCCAAAGAAGAAACCTCAAGCAAAGCAATTGCTGTTTCCAAAGGTGAAATGGCTGCTCAATGTCCCTCCGCTGCAGAAAGTGTCGTCAGTATTTCTGCAGAAGAACAAGAGAGACAACGTTTGGCATCATCTCTATTTGTTGGTTTGGGATCCAATAACCTTGTAAATCTGATGGGGAAAACTCCGAGCACTGCCCATACATTTCGCCGAAAGTCAAAGAATATTGAGAAACAAAATAGCTCTAACAAGATGACGTCTGCACAGAAGGCGACTGCTTCACACCCTGGTGAAATTCCAGATCTAATGGATAATGTCCCAGAAAGCTGTATTTCCTTCCAAGGGAGTAAAGCAGTACCTCTGGTGAATGCAGCAACTTGCTCTGGAGTGGAACTTGGCCAAGTATCTGATCAAGCCTGGGCTCTGAATAACAACTTAATCGAAGCCAAGCCGACAGCATCAAAGGAATCTTTTTCGGGTCTATTTGCAGATGGGAATTTTGATATTATACAGCCTGTAAATTGCAATTCTTCCTCTGTGGCCCATGAACCTGTCTCCAGTTTGACTCCAAACTTGCCCGTCGAGTTCTCTGAGTTTTTGCATTCAGGATTTGAGCAAGTTTGTGCCACTGAAAATGTAACTCTGTCTTCCTGCAAAGTCTGGAAAGAGGACTGTCTGTTAATAATCCTATTTTTTACTAATCACAGCGATATAGAAGTTACAAATGTGACCATCGAATTTACATTGACTGAAGAATTGAAGGCTGTTGAGAGTTCAACTTTCCATTTTGCAACCATAGAATGCCATGCCTCCGTCAGATGTCAGCTGTGTCTGCAAATGGTGAAGCCTTGTTCCCAGGTAGCCCTCTCCGGGCACGTCAGTTATCATCCCAAGACCCACCAATGCACTGAAGAGAAATGTACACTAACTCTATTCTTAACTGATTTTATCAGGCCTTTAAAACTGTCGACTGAAGAATTTGGGAACCTTTGGCTTTCACTCTCCAACGACGTGAAACAGAATCTTAACGTCTCATCAAAGTCATCGGAAGCTTTGACGTCAGCACTTAACACTCTACAGAAAGAGCTCCAGCTGCACATTGTGGCTATTATAGGAACAGAAGGGATTGTGTCCTGCCAGCTGCTTCCATCGACGGCCTGTTTACTCCACTGTCGATTCCACGCTGGGACTTTATCACTGTGGCTGCGATCAGGTTGCGGTGTCCTTCCCGACTGCTTGCTGTACGAGTGCCAAAAGGTGATACGAAAAATGTAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF14807	AP4E_app_platf	Adaptin AP4 complex epsilon appendage platform	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR017109	Family	Adaptor protein complex AP-4, epsilon subunit	Interproscan
IPR028269	Domain	AP-4 complex subunit epsilon-1, C-terminal	Interproscan
IPR050840	Family	Adaptor Complexes Large Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0030124	Cellular Component	AP-4 adaptor complex	Interproscan
GO:0140312	Molecular Function	cargo adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-